DLEU7

deleted in lymphocytic leukemia 7

Basic information

Region (hg38): 13:50519363-50843939

Links

ENSG00000186047 ∙ NCBI:220107 ∙ OMIM:618634 ∙ HGNC:17567 ∙ Uniprot:Q6UYE1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the DLEU7 gene.

• Inborn genetic diseases (14 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the DLEU7 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			14			14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	0	0

Variants in DLEU7

This is a list of pathogenic ClinVar variants found in the DLEU7 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-50713230-A-G		not specified	Uncertain significance (Oct 27, 2022)
13-50843228-C-T		not specified	Uncertain significance (Aug 10, 2021)
13-50843261-G-A		not specified	Uncertain significance (Feb 28, 2023)
13-50843280-G-C		not specified	Uncertain significance (Jun 12, 2023)
13-50843338-G-T		not specified	Uncertain significance (Sep 20, 2023)
13-50843409-C-T		not specified	Uncertain significance (Oct 29, 2021)
13-50843419-A-C		not specified	Uncertain significance (Jun 11, 2021)
13-50843433-C-T		not specified	Uncertain significance (Mar 11, 2022)
13-50843451-C-G		not specified	Uncertain significance (Sep 22, 2023)
13-50843460-G-T		not specified	Uncertain significance (Mar 04, 2024)
13-50843465-G-T		not specified	Uncertain significance (Feb 26, 2024)
13-50843474-C-T		not specified	Uncertain significance (Jun 13, 2022)
13-50843496-C-T		not specified	Uncertain significance (Apr 12, 2022)
13-50843502-C-T		not specified	Uncertain significance (Feb 13, 2024)
13-50843511-C-T		not specified	Uncertain significance (Nov 22, 2021)
13-50843520-G-T		not specified	Uncertain significance (Dec 02, 2021)
13-50843534-C-T		not specified	Uncertain significance (Oct 12, 2022)
13-50843558-C-A		not specified	Uncertain significance (May 05, 2023)
13-50843622-C-A		not specified	Uncertain significance (Jan 31, 2022)
13-50843642-G-A		not specified	Uncertain significance (Mar 29, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
DLEU7	protein_coding	protein_coding	ENST00000400393	2	132932

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.185	0.658	109686	0	14	109700	0.0000638

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.730	36	50.6	0.711	0.00000242	941
Missense in Polyphen		14	20.767	0.67414		335
Synonymous	1.46	16	25.4	0.631	0.00000121	373
Loss of Function	0.904	1	2.56	0.390	1.10e-7	37

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000896	0.0000896
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000124	0.000124
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.000190	0.000190

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0790

Haploinsufficiency Scores

• pHI: 0.104
• hipred: N
• hipred_score: 0.367
• ghis: 0.399

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Dleu7
• Phenotype: cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); growth/size/body region phenotype