DRAM1

DNA damage regulated autophagy modulator 1

Basic information

Region (hg38): 12:101877579-102012130

Links

ENSG00000136048 ∙ NCBI:55332 ∙ OMIM:610776 ∙ HGNC:25645 ∙ Uniprot:Q8N682 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the DRAM1 gene.

• Inborn genetic diseases (9 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the DRAM1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9			9
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	0	0

Variants in DRAM1

This is a list of pathogenic ClinVar variants found in the DRAM1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-101877899-A-T		not specified	Uncertain significance (Aug 01, 2022)
12-101877907-C-T		not specified	Uncertain significance (Dec 06, 2022)
12-101897868-C-T		not specified	Uncertain significance (Feb 13, 2024)
12-101897918-T-G		not specified	Uncertain significance (Jan 20, 2023)
12-101901342-C-A		not specified	Uncertain significance (Jan 09, 2023)
12-101901407-G-A		not specified	Uncertain significance (Jan 06, 2023)
12-101908252-A-G		not specified	Uncertain significance (May 03, 2023)
12-101908294-T-G		not specified	Uncertain significance (May 31, 2023)
12-101908348-G-A		not specified	Uncertain significance (Mar 25, 2022)
12-101914209-C-A		not specified	Uncertain significance (Feb 15, 2023)
12-101914213-A-C		not specified	Uncertain significance (Jun 28, 2023)
12-101920124-G-A		not specified	Uncertain significance (Dec 27, 2023)
12-101921247-A-G		not specified	Uncertain significance (May 27, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
DRAM1	protein_coding	protein_coding	ENST00000258534	7	134780

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.228	0.765	124776	0	12	124788	0.0000481

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.32	90	133	0.677	0.00000703	1551
Missense in Polyphen		23	45.528	0.50518		522
Synonymous	-0.161	54	52.5	1.03	0.00000326	471
Loss of Function	2.33	3	11.5	0.260	4.88e-7	144

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000174	0.000174
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000354	0.0000353
Middle Eastern	0.00	0.00
South Asian	0.0000718	0.0000654
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Lysosomal modulator of autophagy that plays a central role in p53/TP53-mediated apoptosis. Not involved in p73/TP73- mediated autophagy. {ECO:0000269|PubMed:16839881, ECO:0000269|PubMed:17304243}.

Intolerance Scores

• loftool: 0.364
• rvis_EVS: -0.23
• rvis_percentile_EVS: 36.86

Haploinsufficiency Scores

• hipred: Y
• hipred_score: 0.650
• ghis: 0.559

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.508

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Dram1

Gene ontology

• Biological process: autophagy;apoptotic process;regulation of autophagy
• Cellular component: cytoplasm;lysosome;lysosomal membrane;integral component of membrane
• Molecular function: protein binding