DRAP1

DR1 associated protein 1

Basic information

Region (hg38): 11:65919274-65921563

Links

ENSG00000175550 ∙ NCBI:10589 ∙ OMIM:602289 ∙ HGNC:3019 ∙ Uniprot:Q14919 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the DRAP1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the DRAP1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			10			10
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	10	0	1

Variants in DRAP1

This is a list of pathogenic ClinVar variants found in the DRAP1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-65919511-A-C		not specified	Uncertain significance (Jun 28, 2024)
11-65919785-G-A			Benign (Feb 20, 2018)
11-65919962-C-T		not specified	Uncertain significance (Sep 11, 2024)
11-65920458-C-T		not specified	Uncertain significance (Feb 16, 2023)
11-65920571-G-A		not specified	Uncertain significance (Sep 23, 2023)
11-65920573-C-T		not specified	Uncertain significance (Mar 20, 2024)
11-65920610-T-C		not specified	Uncertain significance (Jul 26, 2021)
11-65920629-C-G		not specified	Uncertain significance (Oct 29, 2021)
11-65920906-C-G		not specified	Uncertain significance (Jan 07, 2022)
11-65921332-C-T		not specified	Uncertain significance (Oct 07, 2024)
11-65921337-A-C		not specified	Uncertain significance (Dec 02, 2021)
11-65921347-T-C		not specified	Uncertain significance (Aug 05, 2024)
11-65921355-G-A		not specified	Likely benign (Aug 20, 2024)
11-65921368-C-T		not specified	Uncertain significance (Dec 07, 2021)
11-65921372-G-T		not specified	Uncertain significance (Mar 18, 2024)
11-65921386-C-T		not specified	Uncertain significance (Nov 30, 2022)
11-65921403-G-A		not specified	Uncertain significance (Dec 15, 2023)
11-65921411-G-C		not specified	Uncertain significance (Dec 03, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
DRAP1	protein_coding	protein_coding	ENST00000312515	7	2305

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.130	0.850	125721	0	6	125727	0.0000239

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.867	94	121	0.778	0.00000648	1331
Missense in Polyphen		10	29.192	0.34256		342
Synonymous	-1.67	69	53.5	1.29	0.00000334	383
Loss of Function	2.00	3	9.76	0.308	4.13e-7	127

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000301	0.0000301
Ashkenazi Jewish	0.00	0.00
East Asian	0.000164	0.000163
Finnish	0.00	0.00
European (Non-Finnish)	0.0000111	0.00000879
Middle Eastern	0.000164	0.000163
South Asian	0.00	0.00
Other	0.000164	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: The association of the DR1/DRAP1 heterodimer with TBP results in a functional repression of both activated and basal transcription of class II genes. This interaction precludes the formation of a transcription-competent complex by inhibiting the association of TFIIA and/or TFIIB with TBP. Can bind to DNA on its own. {ECO:0000269|PubMed:8608938, ECO:0000269|PubMed:8670811}.
• Pathway: Developmental Biology;Signal Transduction;Signaling by Activin;Signaling by NODAL;Signaling by TGF-beta family members (Consensus)

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.193
• rvis_EVS: -0.38
• rvis_percentile_EVS: 27.42

Haploinsufficiency Scores

• pHI: 0.265
• hipred: Y
• hipred_score: 0.620
• ghis: 0.603

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: E
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.910

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Drap1
• Phenotype: embryo phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span)

Gene ontology

• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;DNA-binding transcription factor activity;transcription coregulator activity;transcription corepressor activity;protein binding;identical protein binding;protein heterodimerization activity