DYNAP

dynactin associated protein

Basic information

Region (hg38): 18:54587757-54599493

Previous symbols: [ "C18orf26" ]

Links

ENSG00000178690 ∙ NCBI:284254 ∙ OMIM:619421 ∙ HGNC:26808 ∙ Uniprot:Q8N1N2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the DYNAP gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the DYNAP gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			14	1		15
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	1	0

Variants in DYNAP

This is a list of pathogenic ClinVar variants found in the DYNAP region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
18-54591217-A-C		not specified	Uncertain significance (May 30, 2024)
18-54591224-G-A		not specified	Uncertain significance (Jun 28, 2023)
18-54591232-C-A		not specified	Uncertain significance (Sep 13, 2023)
18-54591288-C-G		not specified	Uncertain significance (Mar 07, 2023)
18-54591298-G-C		not specified	Uncertain significance (Oct 16, 2024)
18-54591299-G-A		not specified	Uncertain significance (Sep 04, 2024)
18-54591338-C-T		not specified	Uncertain significance (Nov 17, 2022)
18-54594942-A-G		not specified	Uncertain significance (Aug 09, 2021)
18-54595036-G-C		not specified	Uncertain significance (Feb 22, 2023)
18-54595044-G-A		not specified	Likely benign (Dec 17, 2021)
18-54595059-C-T		not specified	Uncertain significance (Mar 19, 2024)
18-54597829-G-A		not specified	Uncertain significance (Nov 24, 2024)
18-54597837-T-C		not specified	Uncertain significance (Oct 01, 2024)
18-54597867-C-T		not specified	Uncertain significance (Apr 13, 2022)
18-54597889-C-G		not specified	Uncertain significance (Dec 02, 2024)
18-54597934-C-T		not specified	Uncertain significance (Dec 02, 2024)
18-54598068-G-C		not specified	Uncertain significance (Feb 25, 2025)
18-54598095-G-A		not specified	Uncertain significance (Mar 15, 2024)
18-54598101-A-G		not specified	Uncertain significance (Sep 29, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
DYNAP	protein_coding	protein_coding	ENST00000321600	3	11737

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00258	0.571	124003	0	1	124004	0.00000403

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.598	131	113	1.16	0.00000530	1348
Missense in Polyphen		22	18.435	1.1934		216
Synonymous	0.572	35	39.6	0.884	0.00000204	422
Loss of Function	0.319	4	4.75	0.842	2.00e-7	60

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000893	0.00000893
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays a role in the regulation of cell proliferation. Promotes activation of the AKT1 signaling pathway. Promotes phosphorylation of AKT1 at 'Ser-473'. {ECO:0000269|PubMed:20978158}.

Intolerance Scores

• rvis_EVS: 0.68
• rvis_percentile_EVS: 84.93

Haploinsufficiency Scores

• pHI: 0.0911
• hipred: N
• hipred_score: 0.173

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Dynap

Gene ontology

• Biological process: positive regulation of cell population proliferation;activation of protein kinase B activity;regulation of apoptotic process;cellular response to ergosterol
• Cellular component: Golgi membrane;Golgi apparatus;plasma membrane;integral component of membrane
• Molecular function: protein binding