EAF1-AS1

EAF1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 3:15436171-15449994

Links

ENSG00000249786 ∙ ∙ ∙ HGNC:42328 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the EAF1-AS1 gene.

• Congenital myasthenic syndrome 5 (101 variants)
• not provided (23 variants)
• Inborn genetic diseases (8 variants)
• not specified (7 variants)
• Congenital myasthenic syndrome (2 variants)
• Abnormality of the musculature (1 variants)
• Synaptic congenital myasthenic syndrome (1 variants)
• Myasthenic syndrome, slow-channel congenital (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the EAF1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)	5	1	2	2		10
splice region						0
non coding	6	7	60	23	20	116
Total	11	8	62	25	20

Highest pathogenic variant AF is 0.0000461

Variants in EAF1-AS1

This is a list of pathogenic ClinVar variants found in the EAF1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-15436375-T-C		not specified	Uncertain significance (Aug 02, 2023)
3-15436377-A-G		not specified	Uncertain significance (Aug 02, 2023)
3-15436408-C-T		not specified	Uncertain significance (Nov 26, 2024)
3-15436426-G-T		not specified	Uncertain significance (Sep 22, 2022)
3-15436433-C-T			Benign (Dec 31, 2019)
3-15436455-G-A		not specified	Uncertain significance (Aug 04, 2022)
3-15436462-A-G		not specified	Uncertain significance (Oct 12, 2022)
3-15436488-T-C		not specified	Uncertain significance (Nov 10, 2022)
3-15436513-G-C		not specified	Uncertain significance (Apr 26, 2024)
3-15436540-G-A			Likely benign (Feb 01, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP