EPHA2-AS1

EPHA2 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 1:16155072-16183148

Links

ENSG00000227959 ∙ NCBI:101927479 ∙ ∙ HGNC:40216 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the EPHA2-AS1 gene.

• Cataract 6 multiple types (2 variants)
• Inborn genetic diseases (2 variants)
• Age-related cortical cataract (1 variants)
• Cataract;Bilateral microphthalmos;Congenital aniridia (1 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the EPHA2-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding	1		5	1		7
Total	1	0	5	1	0

Variants in EPHA2-AS1

This is a list of pathogenic ClinVar variants found in the EPHA2-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-16155675-C-G			Likely benign (Apr 24, 2019)
1-16155856-C-A		Cataract 6 multiple types	Uncertain significance (Jan 01, 2019)
1-16155892-C-T		Bilateral microphthalmos;Congenital aniridia;Cataract	Pathogenic (Jun 03, 2021)
1-16155893-A-C		Inborn genetic diseases	Uncertain significance (Sep 17, 2021)
1-16155926-G-A		Inborn genetic diseases	Uncertain significance (May 03, 2023)
1-16156013-C-A		Cataract 6 multiple types	Uncertain significance (Jan 12, 2018)
1-16156084-A-G		Age-related cortical cataract	Uncertain significance (Jun 14, 2016)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP