ERMN

ermin

Basic information

Region (hg38): 2:157318631-157327713

Previous symbols: [ "KIAA1189" ]

Links

ENSG00000136541 ∙ NCBI:57471 ∙ OMIM:610072 ∙ HGNC:29208 ∙ Uniprot:Q8TAM6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ERMN gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ERMN gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	2	1	29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	2	1

Variants in ERMN

This is a list of pathogenic ClinVar variants found in the ERMN region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-157321282-T-C		not specified	Uncertain significance (Feb 10, 2025)
2-157321359-G-T		not specified	Uncertain significance (Sep 01, 2021)
2-157321383-C-T		not specified	Uncertain significance (May 08, 2023)
2-157321392-C-T		not specified	Uncertain significance (Aug 12, 2024)
2-157321398-G-T		not specified	Uncertain significance (Jan 23, 2025)
2-157321489-C-T		not specified	Uncertain significance (Dec 31, 2024)
2-157321490-C-G		not specified	Uncertain significance (Aug 20, 2024)
2-157321515-A-G		not specified	Uncertain significance (May 31, 2023)
2-157321536-T-C		not specified	Uncertain significance (Apr 05, 2023)
2-157321548-T-A		not specified	Uncertain significance (Sep 26, 2024)
2-157321549-T-C		not specified	Likely benign (Feb 12, 2024)
2-157321554-T-C		not specified	Uncertain significance (Oct 13, 2021)
2-157321563-T-C		not specified	Uncertain significance (Sep 03, 2024)
2-157321580-C-G		not specified	Uncertain significance (Aug 20, 2024)
2-157321620-T-A		not specified	Uncertain significance (Jun 02, 2023)
2-157321651-A-G		not specified	Uncertain significance (Dec 29, 2024)
2-157321674-C-T		not specified	Uncertain significance (Jul 05, 2023)
2-157321687-T-C		not specified	Uncertain significance (Jun 05, 2023)
2-157321696-C-A		not specified	Uncertain significance (Jan 02, 2024)
2-157321697-T-G		not specified	Uncertain significance (Jan 31, 2023)
2-157321698-T-G		not specified	Uncertain significance (Aug 16, 2022)
2-157321758-C-A		not specified	Uncertain significance (Jan 31, 2022)
2-157321771-G-A		not specified	Uncertain significance (Aug 12, 2021)
2-157321773-A-G		not specified	Uncertain significance (Mar 06, 2025)
2-157321785-T-C		not specified	Uncertain significance (Apr 22, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ERMN	protein_coding	protein_coding	ENST00000397283	4	9089

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000118	0.611	124768	0	10	124778	0.0000401

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.158	159	153	1.04	0.00000729	2019
Missense in Polyphen		33	43.134	0.76506		598
Synonymous	-0.450	58	53.8	1.08	0.00000270	506
Loss of Function	0.852	9	12.2	0.737	6.53e-7	150

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000869	0.0000869
Ashkenazi Jewish	0.00	0.00
East Asian	0.000112	0.000111
Finnish	0.00	0.00
European (Non-Finnish)	0.0000265	0.0000265
Middle Eastern	0.000112	0.000111
South Asian	0.0000692	0.0000654
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays a role in cytoskeletal rearrangements during the late wrapping and/or compaction phases of myelinogenesis as well as in maintenance and stability of myelin sheath in the adult. May play an important role in late-stage oligodendroglia maturation, myelin/Ranvier node formation during CNS development, and in the maintenance and plasticity of related structures in the mature CNS (By similarity). {ECO:0000250}.

Recessive Scores

• pRec: 0.0832

Intolerance Scores

• loftool: 0.322
• rvis_EVS: 0.64
• rvis_percentile_EVS: 83.78

Haploinsufficiency Scores

• pHI: 0.0930
• hipred: N
• hipred_score: 0.123
• ghis: 0.379

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.354

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ermn

Gene ontology

• Biological process: morphogenesis of a branching structure;actin filament organization;regulation of cell shape;regulation of cell projection organization
• Cellular component: cytoplasm;cytoskeleton;cell cortex;filopodium;internode region of axon;paranode region of axon;neuronal cell body;myelin sheath;extracellular exosome
• Molecular function: actin filament binding