ETFDH

protein-coding

electron transfer flavoprotein dehydrogenase

Gene summary

This gene encodes a component of the electron-transfer system in mitochondria and is essential for electron transfer from a number of mitochondrial flavin-containing dehydrogenases to the main respiratory chain. Mutations in this gene are associated with glutaric acidemia. Alternatively spliced transcript variants that encode distinct isoforms have been observed. [provided by RefSeq, Aug 2013]

MANE transcript

NM_004453.4

Inheritance

AR

ClinVar variants

P:339U:275B:254

Top phenotype

Multiple acyl-CoA dehydrogenase deficiency (Glutaric aciduria IIC)

gnomAD constraint

pLI —, LoF o/e 0.74

Max pathogenic AF

—

Genomic locus

chr4:158,671,968-158,710,742

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~38.8 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

multiple acyl-CoA dehydrogenase deficiencyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009282

Submitter: G2P

multiple acyl-CoA dehydrogenase deficiencyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009282

Submitter: ClinGen

*ETFDH* (MIM 231675) was first reported in relation to autosomal recessive multiple acyl-CoA dehydrogenase deficiency in 2003 (PMID: 12815589). This disorder affects fatty acid oxidation and electron transfer, presenting with metabolic acidosis, hypoglycemia, hypotonia, hepatomegaly, and variable onset from neonatal to adulthood. Twenty-one variants (including missense, nonsense, frameshift, and splice-site changes) have been reported in 19 probands in 11 publications (PMIDs: 12815589, 17584774, 19249206, 19265687, 20020044, 22013910, 22580358, 22611163, 24123825, 29249369, 2989828). These variants include missense changes in highly conserved residues within the FAD-binding domain (e.g., p.Ala84Thr, p.Arg175Leu), frameshift variants (e.g., c.51dupT), splice-site alterations (e.g., c.405+3A>T), and nonsense mutations. Functional studies demonstrate that several missense variants markedly reduce ETFDH activity and impair riboflavin responsiveness, while null variants result in absent protein expression in patient fibroblasts (PMIDs: 2989828, 22611163). More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. Experimental evidence further supports this gene-disease relationship. *ETFDH* encodes electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO), a key component of mitochondrial β-oxidation, and its deficiency disrupts energy metabolism, leading to characteristic biochemical abnormalities (PMID: 3620453). Patient cells show absent ETF-QO protein and activity (PMID: 2989828), and non-patient cell assays confirm reduced activity of mutant proteins under riboflavin-limited conditions (PMID: 22611163). Zebrafish and fruit fly models with ETFDH disruption exhibit metabolic profiles similar to those observed in affected individuals, including accumulation of acylcarnitines and mitochondrial dysfunction (PMIDs: 20020044, 22580358). In summary, there is definitive evidence to support the relationship between *ETFDH* and autosomal recessive MADD. This has been repeatedly demonstrated in both the research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen FAO GCEP on the meeting date 2018 May 22 (SOP Version 6). ETFDH: Data provided by the ClinGen Prenatal GCEP from July 9, 2025 secondary analysis Multiple acyl-CoA dehydrogenation deficiency (MADD) is an autosomal recessive disorder of fatty acid oxidation due to deficiency of the mitochondrial electron transfer chain. MADD can be caused by deficiencies in any of three proteins electron transfer flavoprotein (ETF) system, including ETFA, ETFB, and ETFDH. Pathogenic variants in the *ETFDH* gene are the most common cause of MADD and represent approximately 93% of cases. Although genetically heterogeneous, there does not appear to be a difference in clinical phenotypes. The severity of disease is correlated with residual protein function and ranges from a severe neonatal form with or without congenital anomalies to a milder, later onset form. Neonatal forms present with hypotonia, severe metabolic acidosis, hyperammonemia, hypoglycemia, respiratory distress, hepatomegaly, and a sweaty feet odor. Prenatal features and congenital physical anomalies can include cystic/dysplastic kidneys with sequelae of oligohydramnios/anhydramnios, hypertrophic cardiomyopathy, dysmorphic facial features including midface hypoplasia, tented upper lip, low set ears, or high anterior hairline. Most severely affected newborns die in the first week of life. (PMID 12815589, 36406819, 32959991)

multiple acyl-CoA dehydrogenase deficiencySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0009282

Submitter: Labcorp Genetics (formerly Invitae)

multiple acyl-CoA dehydrogenase deficiencyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009282

Submitter: Natera

multiple acyl-CoA dehydrogenase deficiencySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0009282

Submitter: PanelApp Australia

multiple acyl-CoA dehydrogenase deficiencyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009282

Submitter: Ambry Genetics

Clinical Genomic Database (CGD)

Multiple acyl-CoA dehydrogenase deficiency (Glutaric aciduria IIC)AR

Manifestation: Biochemical; Gastrointestinal; Musculoskeletal; Neurologic; Renal

Intervention: Biochemical

Rationale: Dietary measures (fasting avoidance and low-fat diet, as well as supplementation, such as with riboflavin and carnitine) may be beneficial

Refs: 7145508; 8771170; 12815589; 16527485; 17412732; 17584774; 18289905; 19208393; 19249206; 19758981; 19783111; 20138856; 20370797; 20837308; 21088898; 21616504; 21907580; 22041377; 22231380; 22664151; 23106979; 23893693Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to ETFDH variants in ClinVar

16 Conditions Cataloged
Multiple acyl-CoA dehydrogenase deficiencyTotal: 905
not providedTotal: 190
Glutaric acidemia type 2CTotal: 164
not specifiedTotal: 102
Inborn genetic diseasesTotal: 62
ETFDH-related disorderTotal: 60
Glutaric acidemia IIcTotal: 9
Glutaric acidemia iic, late-onsetTotal: 4

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_004453.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
9
clinvar
241
clinvar
250
missense
16
clinvar
121
clinvar
261
clinvar
12
clinvar
410
nonsense
27
clinvar
22
clinvar
49
start loss
3
clinvar
1
clinvar
1
clinvar
5
frameshift
45
clinvar
59
clinvar
1
clinvar
105
splice donor/acceptor (+/-2bp)
6
clinvar
39
clinvar
3
clinvar
1
clinvar
49
Total972422752540868

Highest pathogenic variant AF is 0.00020300421

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 72 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_004453.4RefSeqNP_004444.213MANE Select
ENST00000511912.6EnsemblENSP00000426638.113MANE Select
NM_001281737.2RefSeqNP_001268666.112Standard
NM_001281738.1RefSeqNP_001268667.111Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
etfdhDanio rerio

Structure: glial cell

Quality: malformed

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Respiratory electron transport
  • The citric acid (TCA) cycle and respiratory electron transport
  • Metabolism
  • Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.

Biological Process

  • response to oxidative stress
  • electron transport chain
  • respiratory electron transport chain
  • fatty acid beta-oxidation using acyl-CoA dehydrogenase

Molecular Function

  • electron-transferring-flavoprotein dehydrogenase activity
  • electron transfer activity
  • oxidoreductase activity
  • oxidoreductase activity, oxidizing metal ions with flavin as acceptor
  • metal ion binding

Cellular Component

  • mitochondrial matrix
  • integral component of mitochondrial inner membrane
  • mitochondrial membrane

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000511912
Coding exons
13
Length
37499
Individuals with no LoFs
125610
Homozygous LoFs
0
Heterozygous LoFs
137
Defined
125747
p
0.000545
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.3933143340.9400.00001664022
Missense (PolyPhen)139148.760.934361713
Synonymous-0.1631191171.020.000006091196
Loss of Function1.362432.30.7420.00000152397

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000750.00074rare
Latino/Admixed American0.00110.0011notable
Ashkenazi Jewish0.000600.00050rare
East Asian0.000160.00016rare
Finnish0.0000960.000092rare
European (Non-Finnish)0.000610.00061rare
South Asian0.000200.00020rare
Other0.000510.00049rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Accepts electrons from ETF and reduces ubiquinone.;
Disease
DISEASE: Glutaric aciduria 2C (GA2C) [MIM:231680]: An autosomal recessively inherited disorder of fatty acid, amino acid, and choline metabolism. It is characterized by multiple acyl-CoA dehydrogenase deficiencies resulting in large excretion not only of glutaric acid, but also of lactic, ethylmalonic, butyric, isobutyric, 2-methyl-butyric, and isovaleric acids. {ECO:0000269|PubMed:12359134, ECO:0000269|PubMed:12815589, ECO:0000269|PubMed:16527485, ECO:0000269|PubMed:17412732, ECO:0000269|PubMed:19249206, ECO:0000269|PubMed:20370797}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.315

Intolerance Scores

LoFtool
0.286
RVIS EVS
-0.56
RVIS percentile EVS
19.54

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.951

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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