FAM110A

family with sequence similarity 110 member A

Basic information

Region (hg38): 20:833715-857463

Previous symbols: [ "C20orf55" ]

Links

ENSG00000125898 ∙ NCBI:83541 ∙ OMIM:611393 ∙ HGNC:16188 ∙ Uniprot:Q9BQ89 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FAM110A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FAM110A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			21	1	1	23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	21	1	1

Variants in FAM110A

This is a list of pathogenic ClinVar variants found in the FAM110A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
20-844841-G-A		not specified	Likely benign (Nov 08, 2022)
20-844847-G-A		not specified	Uncertain significance (Dec 02, 2022)
20-844949-G-T		not specified	Uncertain significance (Mar 29, 2022)
20-844964-G-A		not specified	Uncertain significance (Dec 28, 2023)
20-844985-A-G		not specified	Uncertain significance (Dec 28, 2023)
20-845138-G-C		not specified	Uncertain significance (Sep 20, 2023)
20-845156-G-A		not specified	Uncertain significance (May 23, 2023)
20-845184-C-T		not specified	Uncertain significance (Oct 05, 2023)
20-845190-G-C		not specified	Uncertain significance (Nov 21, 2022)
20-845193-C-T		not specified	Uncertain significance (Aug 17, 2022)
20-845201-G-C			Benign (Jun 27, 2018)
20-845216-C-G		not specified	Uncertain significance (May 09, 2023)
20-845235-C-A		not specified	Uncertain significance (Dec 11, 2023)
20-845255-G-A		not specified	Uncertain significance (Dec 16, 2023)
20-845270-G-A		not specified	Uncertain significance (Nov 21, 2023)
20-845327-G-A		not specified	Uncertain significance (Apr 24, 2024)
20-845383-G-T		not specified	Uncertain significance (Jul 14, 2022)
20-845394-G-A		not specified	Uncertain significance (Feb 27, 2023)
20-845411-G-C		not specified	Uncertain significance (Jan 05, 2022)
20-845472-A-G		not specified	Uncertain significance (Sep 16, 2021)
20-845547-G-T		not specified	Uncertain significance (Jun 18, 2021)
20-845580-G-T		not specified	Uncertain significance (Jun 06, 2022)
20-845601-A-G		not specified	Uncertain significance (May 22, 2023)
20-845606-G-A		not specified	Uncertain significance (Mar 01, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FAM110A	protein_coding	protein_coding	ENST00000304189	1	23749

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.361	0.592	125073	0	4	125077	0.0000160

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.641	150	174	0.863	0.0000114	1763
Missense in Polyphen		70	78.71	0.88934		797
Synonymous	1.78	57	76.8	0.742	0.00000470	691
Loss of Function	1.56	1	4.63	0.216	2.75e-7	51

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000162	0.000124
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000901	0.00000886
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Haploinsufficiency Scores

• pHI: 0.151
• hipred: N
• hipred_score: 0.399
• ghis: 0.400

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.871

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fam110a

Gene ontology

• Cellular component: spindle pole;cytoplasm;microtubule organizing center
• Molecular function: protein binding