FAM171A2

family with sequence similarity 171 member A2

Basic information

Region (hg38): 17:44353215-44363853

Links

ENSG00000161682 ∙ NCBI:284069 ∙ ∙ HGNC:30480 ∙ Uniprot:A8MVW0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FAM171A2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FAM171A2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			43			43
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	43	0	0

Variants in FAM171A2

This is a list of pathogenic ClinVar variants found in the FAM171A2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-44353818-G-A		not specified	Uncertain significance (Feb 28, 2023)
17-44353821-C-T		not specified	Uncertain significance (Sep 22, 2023)
17-44353825-G-C		not specified	Uncertain significance (Dec 06, 2023)
17-44353915-G-A		not specified	Uncertain significance (May 15, 2024)
17-44353971-G-A		not specified	Uncertain significance (Mar 18, 2024)
17-44354005-T-C		not specified	Uncertain significance (Sep 15, 2021)
17-44354047-G-A		not specified	Uncertain significance (Dec 02, 2022)
17-44354049-G-A		not specified	Uncertain significance (Jan 06, 2023)
17-44354073-G-A		not specified	Uncertain significance (Apr 08, 2024)
17-44354082-G-A		not specified	Uncertain significance (Feb 15, 2023)
17-44354127-C-T		not specified	Uncertain significance (Sep 12, 2023)
17-44354130-G-A		not specified	Uncertain significance (Oct 29, 2021)
17-44354395-C-T		not specified	Uncertain significance (Dec 13, 2022)
17-44354431-C-T		not specified	Uncertain significance (Oct 06, 2023)
17-44354463-G-A		not specified	Uncertain significance (Mar 31, 2024)
17-44354511-G-C		not specified	Uncertain significance (Jan 16, 2024)
17-44354515-C-T		not specified	Uncertain significance (Oct 05, 2021)
17-44354523-G-A		not specified	Uncertain significance (Feb 13, 2024)
17-44354544-C-T		not specified	Uncertain significance (Feb 06, 2024)
17-44354595-A-C		not specified	Uncertain significance (Jul 10, 2024)
17-44354608-C-T		not specified	Uncertain significance (Aug 01, 2024)
17-44354620-C-G		not specified	Uncertain significance (Jun 12, 2023)
17-44354701-C-G		not specified	Uncertain significance (Jan 19, 2024)
17-44354752-T-G		not specified	Uncertain significance (Feb 28, 2023)
17-44354798-G-C		not specified	Uncertain significance (Aug 26, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FAM171A2	protein_coding	protein_coding	ENST00000293443	8	10661

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.908	0.0915	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.40	151	260	0.581	0.0000167	5133
Missense in Polyphen		78	126	0.61905		2221
Synonymous	2.02	91	119	0.764	0.00000757	1917
Loss of Function	3.31	2	16.5	0.121	7.74e-7	265

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Haploinsufficiency Scores

• ghis: 0.529

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.259

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fam171a2

Gene ontology

• Cellular component: integral component of membrane