FAM184B

family with sequence similarity 184 member B

Basic information

Region (hg38): 4:17629305-17781621

Links

ENSG00000047662 ∙ NCBI:27146 ∙ OMIM:619945 ∙ HGNC:29235 ∙ Uniprot:Q9ULE4 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FAM184B gene.

• Inborn genetic diseases (59 variants)
• not provided (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FAM184B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			58	4		62
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	58	5	0

Variants in FAM184B

This is a list of pathogenic ClinVar variants found in the FAM184B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-17632593-T-G		not specified	Uncertain significance (Dec 17, 2023)
4-17633740-C-T		not specified	Uncertain significance (Jul 20, 2022)
4-17633777-T-C		not specified	Uncertain significance (Nov 15, 2021)
4-17633788-T-C		not specified	Uncertain significance (Nov 09, 2021)
4-17633793-C-G		not specified	Uncertain significance (Oct 02, 2023)
4-17633807-C-A		not specified	Uncertain significance (Mar 02, 2023)
4-17633807-C-T			Uncertain significance (Sep 01, 2019)
4-17633812-C-A		not specified	Uncertain significance (Aug 21, 2023)
4-17633845-G-A		not specified	Uncertain significance (Aug 15, 2023)
4-17633858-C-T		not specified	Uncertain significance (Dec 17, 2023)
4-17633860-C-T		not specified	Uncertain significance (Feb 22, 2023)
4-17633864-T-C		not specified	Uncertain significance (Oct 06, 2022)
4-17633878-A-G		not specified	Uncertain significance (Sep 19, 2022)
4-17635059-G-A		not specified	Uncertain significance (Nov 18, 2022)
4-17635064-C-T		not specified	Uncertain significance (Oct 06, 2022)
4-17636529-G-A		not specified	Uncertain significance (May 09, 2022)
4-17636553-C-T		not specified	Uncertain significance (Jun 21, 2021)
4-17636583-A-G		not specified	Uncertain significance (Jun 02, 2023)
4-17636627-C-G		not specified	Uncertain significance (Mar 01, 2024)
4-17639313-A-G		not specified	Uncertain significance (May 17, 2023)
4-17639367-C-T		not specified	Uncertain significance (Jun 02, 2023)
4-17642105-C-G		not specified	Uncertain significance (Oct 20, 2021)
4-17642129-C-T		not specified	Uncertain significance (Dec 21, 2022)
4-17642194-G-A		not specified	Uncertain significance (Sep 07, 2022)
4-17642224-C-T		not specified	Uncertain significance (Nov 09, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FAM184B	protein_coding	protein_coding	ENST00000265018	18	152207

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.35e-16	0.972	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.12	485	560	0.866	0.0000331	6877
Missense in Polyphen		123	150.19	0.81896		2056
Synonymous	2.21	188	231	0.815	0.0000143	1967
Loss of Function	2.50	34	53.8	0.632	0.00000265	658

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0964

Intolerance Scores

• rvis_EVS: 1.77
• rvis_percentile_EVS: 96.82

Haploinsufficiency Scores

• ghis: 0.407

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.141

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fam184b
• Phenotype: normal phenotype