FAM187A
Basic information
Region (hg38): 17:44899773-44905390
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
- Primary ciliary dyskinesia 17 (9 variants)
- Primary ciliary dyskinesia (1 variants)
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the FAM187A gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 0 | |||||
missense | 0 | |||||
nonsense | 0 | |||||
start loss | 0 | |||||
frameshift | 0 | |||||
inframe indel | 0 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region ? | 0 | |||||
non coding ? | 9 | |||||
Total | 0 | 0 | 9 | 0 | 0 |
Variants in FAM187A
This is a list of pathogenic ClinVar variants found in the FAM187A region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
17-44899795-G-C | Primary ciliary dyskinesia 17 | Uncertain significance (Jan 13, 2018) | ||
17-44899824-G-A | Primary ciliary dyskinesia 17 | Benign (Jan 13, 2018) | ||
17-44899853-C-T | Primary ciliary dyskinesia 17 | Uncertain significance (Jan 13, 2018) | ||
17-44899858-G-A | Primary ciliary dyskinesia 17 | Uncertain significance (Jan 13, 2018) | ||
17-44900676-C-A | Benign (Jul 09, 2018) | |||
17-44901003-A-G | Primary ciliary dyskinesia | Uncertain significance (Aug 24, 2021) | ||
17-44901006-G-A | Primary ciliary dyskinesia 17 | Uncertain significance (Jan 13, 2018) | ||
17-44901012-ACAT-A | Primary ciliary dyskinesia | Uncertain significance (Oct 30, 2017) | ||
17-44901029-G-C | Primary ciliary dyskinesia • Primary ciliary dyskinesia 17 | Conflicting classifications of pathogenicity (Aug 21, 2022) | ||
17-44901046-G-A | Primary ciliary dyskinesia | Likely benign (Oct 30, 2023) | ||
17-44901050-G-A | Primary ciliary dyskinesia | Uncertain significance (Dec 12, 2023) | ||
17-44901057-T-C | Primary ciliary dyskinesia | Uncertain significance (Oct 05, 2021) | ||
17-44901059-A-G | Primary ciliary dyskinesia | Likely benign (Nov 17, 2023) | ||
17-44901064-T-A | Primary ciliary dyskinesia | Likely benign (Jul 19, 2023) | ||
17-44901064-T-C | Primary ciliary dyskinesia | Likely benign (Nov 14, 2023) | ||
17-44901067-T-C | Primary ciliary dyskinesia | Likely benign (Apr 28, 2023) | ||
17-44901070-G-A | Primary ciliary dyskinesia 17 • Primary ciliary dyskinesia | Conflicting classifications of pathogenicity (Dec 26, 2023) | ||
17-44901076-C-T | Primary ciliary dyskinesia | Likely benign (Mar 22, 2023) | ||
17-44901079-A-G | Primary ciliary dyskinesia | Likely benign (Apr 20, 2018) | ||
17-44901080-C-T | Primary ciliary dyskinesia | Uncertain significance (Aug 08, 2022) | ||
17-44901102-G-A | Primary ciliary dyskinesia 17 • Primary ciliary dyskinesia | Uncertain significance (Sep 06, 2022) | ||
17-44901102-G-C | Uncertain significance (-) | |||
17-44901104-G-A | Primary ciliary dyskinesia | Uncertain significance (Jul 12, 2019) | ||
17-44901113-C-T | Primary ciliary dyskinesia | Pathogenic (Oct 25, 2016) | ||
17-44901127-C-T | Primary ciliary dyskinesia | Likely benign (Oct 15, 2023) |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
FAM187A | protein_coding | protein_coding | ENST00000331733 | 1 | 5624 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
0.00000654 | 0.484 | 0 | 0 | 0 | 0 | 0.00 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | 1.43 | 184 | 247 | 0.744 | 0.0000152 | 2686 |
Missense in Polyphen | 75 | 94.331 | 0.79507 | 1010 | ||
Synonymous | -0.282 | 99 | 95.5 | 1.04 | 0.00000537 | 841 |
Loss of Function | 0.623 | 9 | 11.3 | 0.800 | 4.81e-7 | 129 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.00 | 0.00 |
Ashkenazi Jewish | 0.00 | 0.00 |
East Asian | 0.00 | 0.00 |
Finnish | 0.00 | 0.00 |
European (Non-Finnish) | 0.00 | 0.00 |
Middle Eastern | 0.00 | 0.00 |
South Asian | 0.00 | 0.00 |
Other | 0.00 | 0.00 |
dbNSFP
Source:
Essentials
- essential_gene_CRISPR
- essential_gene_CRISPR2
- N
- essential_gene_gene_trap
- gene_indispensability_pred
- N
- gene_indispensability_score
- 0.0158
Gene Damage Prediction
All | Recessive | Dominant | |
---|---|---|---|
Mendelian | Medium | Medium | Medium |
Primary Immunodeficiency | Medium | Medium | High |
Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Fam187a
- Phenotype
Gene ontology
- Biological process
- Cellular component
- integral component of membrane
- Molecular function