FBN2
protein-codingfibrillin 2, the group of Fibrillins
Gene summary
The protein encoded by this gene is a component of connective tissue microfibrils and may be involved in elastic fiber assembly. Mutations in this gene cause congenital contractural arachnodactyly. [provided by RefSeq, Jul 2008]
- CCA
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~401.3 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0007363
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0007275
Submitter: Franklin by Genoox
A family in which CTS occurred in subsequent generations at an unusually young age underwent DNA examination which identified a heterozygous variant (c.5009T>G; p.Phe1670Cys) in the fibrillin-2 (FBN2) gene that co-segregated with the phenotype in the family. http://dx.doi.org/10.1136/jmedgenet-2020-107085
Inheritance Pattern: AD
Disease ID:MONDO:0014501
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0014501
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0007363
Submitter: ClinGen
*FBN2*, which encodes fibrillin-2, was first reported in association to autosomal dominant Congenital Contractural Arachnodactyly (CCA) in 1995 (PMID: 7773290). CCA is a connective tissue disorder characterized by the following: congenital joint contractures, arachnodactyly, crumpled ears, kyphoscoliosis, Marfanoid habitus, dolichostenomelia, micrognathia, highly arched palate, sternal deformities, and muscle hypoplasia (OMIM: 121050; PMID: 31316167). *FBN2* variants have also been reported in individuals with the following disease entities: thoracic aortic aneurysm and dissection (TAAD) and early-onset macular degeneration. Per criteria outlined by the ClinGen Lumping and Splitting Guidelines, CCA and TAAD have been lumped into a single disease entity, as no differences in molecular mechanism or inheritance pattern were identified, and both interfamilial and intrafamilial variability were observed. Given no evidence of overlap between early-onset macular degeneration and CCA and an unclear molecular mechanism, early-onset macular degeneration has been split and may be curated as a separate disease entity by the ClinGen Retinal GCEP in the future. Evidence supporting the gene-disease relationship between *FBN2* and CCA includes case-level, family segregation, functional, and experimental data. The majority of reported pathogenic variants cluster within exons 24–35, a region critical for microfibril assembly (PMID: 18767143). Notably, *FBN2* variants leading to premature termination are underrepresented, with only six nonsense variants reported as likely pathogenic or pathogenic in ClinVar to date. In contrast, there is an overrepresentation of pathogenic in-frame variants, including missense and splice-site, likely resulting in in-frame exon skipping. While the primary mechanism of disease is not yet well-established, a dominant negative effect is considered most likely. This curation describes 27 unique variants (16 missense, 10 splice site, and 1 nonsense) and 3 families with a combined LOD of 6.3 (PMIDs:7493032, 11754102, 17345643 19006240, 25975422, 35360850, 38326314, 31143044, 27912749, 33638605, 36936417). This gene-disease relationship is further supported by experimental data in the form of expression studies and mice models. FBN2 expression is highly specific to early embryonic development (PMID: 23715323, Accession phs000424.v10.p2). Fbn2 null mice models exhibit phenotypes consistent with CCA, including multiple joint contractures, supporting pathogenic equivalency between dominant-negative and loss-of-function variants (PMIDs:11470817, 20855508). Graded deficiency of Fbn1 and Fbn2 demonstrates that elastic tissue formation may be driven by the total amount of extracellular microfibrils and that fibrillin-2 containing microfibrils may play a functionally distinct role in organizing the embryonic matrix (PMID: 16407178). Aortic disease has been documented in individuals with pathogenic *FBN2* variants and clinically diagnosed CCA (PMIDs: 11754102, 25975422, 19006240). Perhaps most notable, is an adult male in a family of at least four affected individuals, with a splice site variant (*FBN2*:c.4222+5G>A), who passed at age 61yo due to an acute type A aortic dissection (PMID: 25975422). The risk of thoracic aortic aneurysm is approximately 10-15% among this population (GeneReviews, Callewaert, 2022). However, without routine screening for cardiovascular disease, the prevalence may be underreported. Given the potential risks, screening for TAAD should be considered. Currently, there is no evidence for gene-specific surgical management guidelines. In summary, there is definitive evidence to support this gene-disease relationship with replication over time. Although additional functional studies could further elucidate the molecular mechanism(s), no convincing evidence has emerged that contradicts the above evidence regarding *FBN2*-related CCA. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Disease GCEP on 11/7/2025 (SOP Version 11).
Inheritance Pattern: AD
Disease ID:MONDO:0007363
Submitter: Genomics England PanelApp
Inheritance Pattern: AR
Disease ID:MONDO:0007363
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0007363
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0007363
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0007363
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0014501
Submitter: Labcorp Genetics (formerly Invitae)
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular; Craniofacial; Gastrointestinal; Musculoskeletal; Ophthalmologic
Intervention: Cardiovascular
Rationale: The condition may be clinically recognizable in most individuals, but individuals may have cardiovascular manifestations including aortic root dilatation, and surveillance and early interventions may reduce morbidity and mortality
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to FBN2 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_001999.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 28 | 925 | 39 | 992 | ||
| missense | 20 | 91 | 1521 | 501 | 38 | 2171 |
| nonsense | 2 | 8 | 37 | 47 | ||
| start loss | 1 | 1 | ||||
| frameshift | 1 | 4 | 36 | 41 | ||
| splice donor/acceptor (+/-2bp) | 9 | 16 | 47 | 1 | 73 | |
| Total | 32 | 119 | 1670 | 1427 | 77 | 3325 |
Highest pathogenic variant AF is 0.0000065705613
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_001990.2 | 65 | MANE Select | |
| Ensembl | ENSP00000262464.4 | 65 | MANE Select | |
| Ensembl | ENSP00000424753.1 | 8 | Standard | |
| Ensembl | ENSP00000424753.1 | 8 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| fbn2b | Danio rerio | Structure: melanocyte Quality: absent abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Hypothesized Pathways in Pathogenesis of Cardiovascular Disease
- Extracellular matrix organization
- Elastic fibre formation
Biological Process
- extracellular matrix organization
- embryonic limb morphogenesis
- positive regulation of bone mineralization
- sequestering of TGFbeta in extracellular matrix
- camera-type eye development
Molecular Function
- extracellular matrix structural constituent
- calcium ion binding
- protein binding
- extracellular matrix constituent conferring elasticity
Cellular Component
- microfibril
- extracellular region
- extracellular matrix
- collagen-containing extracellular matrix
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000508053
- Coding exons
- 65
- Length
- 401278
- Individuals with no LoFs
- 125707
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 41
- Defined
- 125748
- p
- 0.000163
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 1.55 | 1456 | 1.63e+3 | 0.892 | 0.0000935 | 19376 |
| Missense (PolyPhen) | 373 | 597.85 | 0.6239 | 7149 | ||
| Synonymous | -1.07 | 626 | 593 | 1.06 | 0.0000369 | 5241 |
| Loss of Function | 9.83 | 22 | 153 | 0.143 | 0.00000784 | 1965 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00037 | 0.00037 | rare |
| Latino/Admixed American | 0.00017 | 0.00017 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.00016 | 0.00016 | rare |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.00016 | 0.00016 | rare |
| South Asian | 0.00026 | 0.00026 | rare |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Fibrillin-2: Fibrillins are structural components of 10- 12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-2-containing microfibrils regulate the early process of elastic fiber assembly. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively. {ECO:0000250|UniProtKB:Q61555}.;
- Disease
- DISEASE: Macular degeneration, early-onset (EOMD) [MIM:616118]: An ocular disorder characterized by macular changes resulting in progressive loss of visual acuity. {ECO:0000269|PubMed:24899048}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.229
Intolerance Scores
- LoFtool
- 0.00785
- RVIS EVS
- -1.87
- RVIS percentile EVS
- 2.02
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.778
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | High |
| Cancer | Medium | Medium | Medium |