FBN2

protein-coding

fibrillin 2, the group of Fibrillins

Gene summary

The protein encoded by this gene is a component of connective tissue microfibrils and may be involved in elastic fiber assembly. Mutations in this gene cause congenital contractural arachnodactyly. [provided by RefSeq, Jul 2008]

Previous symbols:
  • CCA

MANE transcript

NM_001999.4

Inheritance

AD, AR

ClinVar variants

P:151U:1670B:1504

Top phenotype

Congenital contractural arachnodactyly (Beals syndrome)

gnomAD constraint

pLI —, LoF o/e 0.14

Max pathogenic AF

—

Genomic locus

chr5:128,257,909-128,659,185

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~401.3 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

congenital contractural arachnodactylySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007363

Submitter: PanelApp Australia

carpal tunnel syndromeLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0007275

Submitter: Franklin by Genoox

A family in which CTS occurred in subsequent generations at an unusually young age underwent DNA examination which identified a heterozygous variant (c.5009T>G; p.Phe1670Cys) in the fibrillin-2 (FBN2) gene that co-segregated with the phenotype in the family. http://dx.doi.org/10.1136/jmedgenet-2020-107085

macular degeneration, early-onsetLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0014501

Submitter: Ambry Genetics

macular degeneration, early-onsetLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0014501

Submitter: PanelApp Australia

congenital contractural arachnodactylyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007363

Submitter: ClinGen

*FBN2*, which encodes fibrillin-2, was first reported in association to autosomal dominant Congenital Contractural Arachnodactyly (CCA) in 1995 (PMID: 7773290). CCA is a connective tissue disorder characterized by the following: congenital joint contractures, arachnodactyly, crumpled ears, kyphoscoliosis, Marfanoid habitus, dolichostenomelia, micrognathia, highly arched palate, sternal deformities, and muscle hypoplasia (OMIM: 121050; PMID: 31316167). *FBN2* variants have also been reported in individuals with the following disease entities: thoracic aortic aneurysm and dissection (TAAD) and early-onset macular degeneration. Per criteria outlined by the ClinGen Lumping and Splitting Guidelines, CCA and TAAD have been lumped into a single disease entity, as no differences in molecular mechanism or inheritance pattern were identified, and both interfamilial and intrafamilial variability were observed. Given no evidence of overlap between early-onset macular degeneration and CCA and an unclear molecular mechanism, early-onset macular degeneration has been split and may be curated as a separate disease entity by the ClinGen Retinal GCEP in the future. Evidence supporting the gene-disease relationship between *FBN2* and CCA includes case-level, family segregation, functional, and experimental data. The majority of reported pathogenic variants cluster within exons 24–35, a region critical for microfibril assembly (PMID: 18767143). Notably, *FBN2* variants leading to premature termination are underrepresented, with only six nonsense variants reported as likely pathogenic or pathogenic in ClinVar to date. In contrast, there is an overrepresentation of pathogenic in-frame variants, including missense and splice-site, likely resulting in in-frame exon skipping. While the primary mechanism of disease is not yet well-established, a dominant negative effect is considered most likely. This curation describes 27 unique variants (16 missense, 10 splice site, and 1 nonsense) and 3 families with a combined LOD of 6.3 (PMIDs:7493032, 11754102, 17345643 19006240, 25975422, 35360850, 38326314, 31143044, 27912749, 33638605, 36936417). This gene-disease relationship is further supported by experimental data in the form of expression studies and mice models. FBN2 expression is highly specific to early embryonic development (PMID: 23715323, Accession phs000424.v10.p2). Fbn2 null mice models exhibit phenotypes consistent with CCA, including multiple joint contractures, supporting pathogenic equivalency between dominant-negative and loss-of-function variants (PMIDs:11470817, 20855508). Graded deficiency of Fbn1 and Fbn2 demonstrates that elastic tissue formation may be driven by the total amount of extracellular microfibrils and that fibrillin-2 containing microfibrils may play a functionally distinct role in organizing the embryonic matrix (PMID: 16407178). Aortic disease has been documented in individuals with pathogenic *FBN2* variants and clinically diagnosed CCA (PMIDs: 11754102, 25975422, 19006240). Perhaps most notable, is an adult male in a family of at least four affected individuals, with a splice site variant (*FBN2*:c.4222+5G>A), who passed at age 61yo due to an acute type A aortic dissection (PMID: 25975422). The risk of thoracic aortic aneurysm is approximately 10-15% among this population (GeneReviews, Callewaert, 2022). However, without routine screening for cardiovascular disease, the prevalence may be underreported. Given the potential risks, screening for TAAD should be considered. Currently, there is no evidence for gene-specific surgical management guidelines. In summary, there is definitive evidence to support this gene-disease relationship with replication over time. Although additional functional studies could further elucidate the molecular mechanism(s), no convincing evidence has emerged that contradicts the above evidence regarding *FBN2*-related CCA. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Disease GCEP on 11/7/2025 (SOP Version 11).

congenital contractural arachnodactylySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007363

Submitter: Genomics England PanelApp

congenital contractural arachnodactylySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0007363

Submitter: PanelApp Australia

congenital contractural arachnodactylySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007363

Submitter: Labcorp Genetics (formerly Invitae)

congenital contractural arachnodactylySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007363

Submitter: Orphanet

congenital contractural arachnodactylyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007363

Submitter: G2P

macular degeneration, early-onsetLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0014501

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Congenital contractural arachnodactyly (Beals syndrome)AD

Manifestation: Cardiovascular; Craniofacial; Gastrointestinal; Musculoskeletal; Ophthalmologic

Intervention: Cardiovascular

Rationale: The condition may be clinically recognizable in most individuals, but individuals may have cardiovascular manifestations including aortic root dilatation, and surveillance and early interventions may reduce morbidity and mortality

Refs: 7493032; 7633409; 8900230; 9106527; 9714438; 10797416; 11754102; 16531736; 20301560; 24899048Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to FBN2 variants in ClinVar

35 Conditions Cataloged
Congenital contractural arachnodactylyTotal: 2969
Familial thoracic aortic aneurysm and aortic dissectionTotal: 1354
not providedTotal: 1293
not specifiedTotal: 547
FBN2-related disorderTotal: 192
Ehlers-Danlos syndromeTotal: 105
Macular degeneration, early-onsetTotal: 91
Connective tissue disorderTotal: 86

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001999.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
28
clinvar
925
clinvar
39
clinvar
992
missense
20
clinvar
91
clinvar
1521
clinvar
501
clinvar
38
clinvar
2171
nonsense
2
clinvar
8
clinvar
37
clinvar
47
start loss
1
clinvar
1
frameshift
1
clinvar
4
clinvar
36
clinvar
41
splice donor/acceptor (+/-2bp)
9
clinvar
16
clinvar
47
clinvar
1
clinvar
73
Total3211916701427773325

Highest pathogenic variant AF is 0.0000065705613

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 19 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001999.4RefSeqNP_001990.265MANE Select
ENST00000262464.9EnsemblENSP00000262464.465MANE Select
ENST00000502468.5EnsemblENSP00000424753.18Standard
ENST00000502468.6EnsemblENSP00000424753.18Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
fbn2bDanio rerio

Structure: melanocyte

Quality: absent

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Hypothesized Pathways in Pathogenesis of Cardiovascular Disease
  • Extracellular matrix organization
  • Elastic fibre formation

Biological Process

  • extracellular matrix organization
  • embryonic limb morphogenesis
  • positive regulation of bone mineralization
  • sequestering of TGFbeta in extracellular matrix
  • camera-type eye development

Molecular Function

  • extracellular matrix structural constituent
  • calcium ion binding
  • protein binding
  • extracellular matrix constituent conferring elasticity

Cellular Component

  • microfibril
  • extracellular region
  • extracellular matrix
  • collagen-containing extracellular matrix

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000508053
Coding exons
65
Length
401278
Individuals with no LoFs
125707
Homozygous LoFs
0
Heterozygous LoFs
41
Defined
125748
p
0.000163
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.5514561.63e+30.8920.000093519376
Missense (PolyPhen)373597.850.62397149
Synonymous-1.076265931.060.00003695241
Loss of Function9.83221530.1430.000007841965

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000370.00037rare
Latino/Admixed American0.000170.00017rare
Ashkenazi Jewish00.0absent
East Asian0.000160.00016rare
Finnish00.0absent
European (Non-Finnish)0.000160.00016rare
South Asian0.000260.00026rare
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Fibrillin-2: Fibrillins are structural components of 10- 12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-2-containing microfibrils regulate the early process of elastic fiber assembly. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively. {ECO:0000250|UniProtKB:Q61555}.;
Disease
DISEASE: Macular degeneration, early-onset (EOMD) [MIM:616118]: An ocular disorder characterized by macular changes resulting in progressive loss of visual acuity. {ECO:0000269|PubMed:24899048}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.229

Intolerance Scores

LoFtool
0.00785
RVIS EVS
-1.87
RVIS percentile EVS
2.02

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.778

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumHigh
CancerMediumMediumMedium
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