FBXO17

F-box protein 17, the group of F-boxes other

Basic information

Region (hg38): 19:38941401-38975742

Previous symbols: [ "FBXO26" ]

Links

ENSG00000269190 ∙ NCBI:115290 ∙ OMIM:609094 ∙ HGNC:18754 ∙ Uniprot:Q96EF6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FBXO17 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FBXO17 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			29	2		31
nonsense			1			1
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	30	2	0

Variants in FBXO17

This is a list of pathogenic ClinVar variants found in the FBXO17 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-38942655-C-T		not specified	Uncertain significance (Nov 18, 2022)
19-38942657-C-A		not specified	Uncertain significance (Oct 20, 2024)
19-38942682-C-T		not specified	Uncertain significance (Nov 13, 2024)
19-38942691-C-T		not specified	Uncertain significance (Jan 26, 2023)
19-38942739-A-G		not specified	Uncertain significance (Jun 21, 2021)
19-38944973-C-T		not specified	Uncertain significance (Dec 30, 2023)
19-38945003-G-A		not specified	Uncertain significance (Mar 29, 2023)
19-38945007-C-T		not specified	Likely benign (May 30, 2024)
19-38945018-G-T		not specified	Uncertain significance (Feb 13, 2015)
19-38945052-G-T		not specified	Uncertain significance (Jun 24, 2022)
19-38945058-G-A		not specified	Uncertain significance (Feb 25, 2025)
19-38945101-C-G		not specified	Uncertain significance (Dec 02, 2024)
19-38946485-A-G		not specified	Uncertain significance (Jan 12, 2024)
19-38946500-C-T		not specified	Uncertain significance (Feb 27, 2024)
19-38946527-C-T		not specified	Uncertain significance (May 01, 2024)
19-38946565-C-G		not specified	Uncertain significance (Sep 11, 2024)
19-38948573-G-C		not specified	Uncertain significance (Dec 01, 2022)
19-38948612-G-C		not specified	Uncertain significance (Dec 03, 2024)
19-38948646-C-T		not specified	Uncertain significance (Jan 31, 2022)
19-38949974-C-T		not specified	Uncertain significance (Sep 16, 2021)
19-38949982-G-T		not specified	Uncertain significance (Jan 03, 2024)
19-38950000-C-A		not specified	Uncertain significance (Jun 05, 2024)
19-38950001-G-C		not specified	Uncertain significance (May 15, 2024)
19-38950013-C-A		not specified	Uncertain significance (Nov 10, 2021)
19-38950070-T-C		not specified	Uncertain significance (Dec 30, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FBXO17	protein_coding	protein_coding	ENST00000292852	5	34507

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
5.68e-13	0.00829	125681	0	65	125746	0.000258

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.214	153	161	0.952	0.00000941	1709
Missense in Polyphen		54	60.345	0.89486		611
Synonymous	0.352	66	69.7	0.946	0.00000450	587
Loss of Function	-0.761	17	13.9	1.22	6.66e-7	135

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00100	0.000999
Ashkenazi Jewish	0.00	0.00
East Asian	0.000115	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.000204	0.000202
Middle Eastern	0.000115	0.0000544
South Asian	0.000328	0.000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Substrate-recognition component of the SCF (SKP1-CUL1-F- box protein)-type E3 ubiquitin ligase complex. Able to recognize and bind denatured glycoproteins, which are modified with complex- type oligosaccharides. Also recognizes sulfated glycans. Does not bind high-mannose glycoproteins.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Haploinsufficiency Scores

• pHI: 0.166
• hipred: N
• hipred_score: 0.208
• ghis: 0.468

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.554

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fbxo17

Gene ontology

• Biological process: protein polyubiquitination;post-translational protein modification
• Cellular component: cytosol;SCF ubiquitin ligase complex
• Molecular function: ubiquitin-protein transferase activity;protein binding