FBXO21

F-box protein 21, the group of F-boxes other

Basic information

Region (hg38): 12:117141990-117190470

Links

ENSG00000135108 ∙ NCBI:23014 ∙ OMIM:609095 ∙ HGNC:13592 ∙ Uniprot:O94952 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FBXO21 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FBXO21 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			24			24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	0	1

Variants in FBXO21

This is a list of pathogenic ClinVar variants found in the FBXO21 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-117146101-T-G		not specified	Uncertain significance (Jul 06, 2021)
12-117155802-T-C		not specified	Uncertain significance (Jul 31, 2023)
12-117155827-G-C		not specified	Uncertain significance (Jun 21, 2023)
12-117155913-G-T		not specified	Uncertain significance (May 06, 2024)
12-117158024-C-T		not specified	Uncertain significance (Jan 10, 2022)
12-117166927-C-A		not specified	Uncertain significance (Dec 16, 2022)
12-117166952-T-C		not specified	Uncertain significance (Jun 29, 2022)
12-117167001-C-T		not specified	Uncertain significance (May 14, 2024)
12-117172516-T-C		not specified	Uncertain significance (Jan 22, 2024)
12-117172555-G-C		not specified	Uncertain significance (Feb 22, 2023)
12-117174230-T-G		not specified	Uncertain significance (Jan 04, 2024)
12-117174307-C-G		not specified	Uncertain significance (Sep 28, 2022)
12-117174669-T-C		not specified	Uncertain significance (May 23, 2023)
12-117174717-C-T		not specified	Uncertain significance (Jun 17, 2024)
12-117174722-C-A		not specified	Uncertain significance (May 10, 2024)
12-117186489-T-C		not specified	Uncertain significance (Dec 03, 2021)
12-117189318-T-C		not specified	Uncertain significance (Jun 17, 2024)
12-117190225-G-C		not specified	Uncertain significance (Oct 06, 2022)
12-117190313-C-G			Benign (Jul 31, 2018)
12-117190361-G-T		not specified	Uncertain significance (Aug 17, 2021)
12-117190362-T-C		not specified	Uncertain significance (Feb 03, 2022)
12-117190371-C-A		not specified	Uncertain significance (Dec 28, 2022)
12-117190378-G-A		not specified	Uncertain significance (Dec 21, 2023)
12-117190413-G-A		not specified	Uncertain significance (Aug 02, 2022)
12-117190416-G-A		not specified	Uncertain significance (Dec 22, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FBXO21	protein_coding	protein_coding	ENST00000330622	12	47191

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.975	0.0246	125739	0	9	125748	0.0000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.72	213	358	0.595	0.0000203	4093
Missense in Polyphen		32	88.152	0.36301		1007
Synonymous	1.32	127	147	0.861	0.00000939	1156
Loss of Function	4.56	5	33.4	0.150	0.00000162	398

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000292	0.0000292
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.0000352	0.0000352
Middle Eastern	0.00	0.00
South Asian	0.0000982	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Substrate-recognition component of the SCF (SKP1-CUL1-F- box protein)-type E3 ubiquitin ligase complex. {ECO:0000250}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.162
• rvis_EVS: -0.78
• rvis_percentile_EVS: 12.77

Haploinsufficiency Scores

• pHI: 0.287
• hipred: Y
• hipred_score: 0.673
• ghis: 0.639

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.874

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fbxo21

Gene ontology

• Biological process: protein polyubiquitination;ubiquitin-dependent protein catabolic process;post-translational protein modification
• Cellular component: ubiquitin ligase complex;cytosol
• Molecular function: DNA binding;ubiquitin-protein transferase activity