FBXO41

F-box protein 41, the group of F-boxes other

Basic information

Region (hg38): 2:73254681-73284478

Links

ENSG00000163013 ∙ NCBI:150726 ∙ OMIM:609108 ∙ HGNC:29409 ∙ Uniprot:Q8TF61 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FBXO41 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FBXO41 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			52			52
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding					1	1
Total	0	0	52	0	1

Variants in FBXO41

This is a list of pathogenic ClinVar variants found in the FBXO41 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-73258990-C-T		not specified	Uncertain significance (Jul 13, 2021)
2-73259025-C-G		not specified	Uncertain significance (Jul 11, 2023)
2-73259224-G-C		not specified	Uncertain significance (Mar 31, 2024)
2-73260419-C-T		not specified	Uncertain significance (Feb 28, 2023)
2-73260421-G-A		not specified	Uncertain significance (Jun 22, 2021)
2-73260457-A-G		not specified	Uncertain significance (Nov 22, 2023)
2-73260466-C-A		not specified	Uncertain significance (Nov 30, 2021)
2-73260466-C-T		not specified	Uncertain significance (Dec 06, 2022)
2-73260532-C-T		not specified	Uncertain significance (Jan 30, 2024)
2-73260832-C-T		not specified	Uncertain significance (Apr 07, 2022)
2-73260833-G-A		not specified	Uncertain significance (Feb 16, 2023)
2-73260845-G-T		not specified	Uncertain significance (Feb 17, 2024)
2-73263736-C-T		not specified	Uncertain significance (Jul 07, 2022)
2-73263781-T-A		not specified	Uncertain significance (Dec 14, 2023)
2-73264310-C-A		not specified	Uncertain significance (Jan 26, 2022)
2-73264345-C-T		not specified	Uncertain significance (Jan 03, 2024)
2-73264346-G-A		not specified	Uncertain significance (Jun 24, 2022)
2-73264403-A-G		not specified	Uncertain significance (Apr 04, 2023)
2-73264429-T-C		not specified	Uncertain significance (Nov 08, 2022)
2-73264462-C-T			Uncertain significance (Jun 19, 2017)
2-73264463-G-A		not specified	Uncertain significance (Nov 18, 2022)
2-73264489-C-T		not specified	Uncertain significance (Aug 13, 2021)
2-73264495-C-T		not specified	Uncertain significance (Jul 09, 2021)
2-73265273-G-A			Benign (Apr 05, 2018)
2-73265329-C-T		not specified	Uncertain significance (Dec 28, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FBXO41	protein_coding	protein_coding	ENST00000521871	12	29750

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.999	0.000559	123386	0	4	123390	0.0000162

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.85	353	465	0.759	0.0000301	5391
Missense in Polyphen		97	165.18	0.58723		1993
Synonymous	0.709	187	200	0.936	0.0000121	1906
Loss of Function	4.77	2	30.4	0.0658	0.00000154	380

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000291	0.0000291
Ashkenazi Jewish	0.0000998	0.0000997
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000178	0.0000178
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Substrate-recognition component of the SCF (SKP1-CUL1-F- box protein)-type E3 ubiquitin ligase complex. {ECO:0000250}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Recessive Scores

• pRec: 0.112

Haploinsufficiency Scores

• pHI: 0.303
• hipred: Y
• hipred_score: 0.654
• ghis: 0.596

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• gene_indispensability_pred: N
• gene_indispensability_score: 0.224

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fbxo41
• Phenotype: nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); hearing/vestibular/ear phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); cellular phenotype; growth/size/body region phenotype

Gene ontology

• Biological process: protein polyubiquitination;post-translational protein modification
• Cellular component: cytosol
• Molecular function: ubiquitin-protein transferase activity