FBXO44

F-box protein 44, the group of F-boxes other

Basic information

Region (hg38): 1:11654375-11663327

Links

ENSG00000132879 ∙ NCBI:93611 ∙ OMIM:609111 ∙ HGNC:24847 ∙ Uniprot:Q9H4M3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FBXO44 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FBXO44 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			25	7		32
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	7	0

Variants in FBXO44

This is a list of pathogenic ClinVar variants found in the FBXO44 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-11655857-G-C		not specified	Uncertain significance (Oct 06, 2024)
1-11655926-C-T		not specified	Uncertain significance (Mar 09, 2025)
1-11655965-G-A		not specified	Uncertain significance (Apr 19, 2023)
1-11655993-G-A		not specified	Uncertain significance (Apr 19, 2023)
1-11656065-T-A		not specified	Uncertain significance (Feb 28, 2024)
1-11656087-C-G		not specified	Uncertain significance (May 10, 2024)
1-11656094-G-A		not specified	Uncertain significance (Oct 27, 2023)
1-11658275-G-A		not specified	Uncertain significance (Feb 13, 2024)
1-11658368-A-G		not specified	Uncertain significance (Jan 18, 2023)
1-11658389-T-C		not specified	Uncertain significance (Mar 08, 2025)
1-11658572-A-T		not specified	Uncertain significance (Nov 09, 2024)
1-11658589-T-G		not specified	Uncertain significance (May 23, 2023)
1-11658603-C-T		not specified	Uncertain significance (Jan 09, 2025)
1-11658607-C-G		not specified	Uncertain significance (Aug 04, 2024)
1-11658607-C-T		not specified	Uncertain significance (Jul 27, 2022)
1-11658739-C-T		not specified	Likely benign (Apr 30, 2024)
1-11658745-C-G		not specified	Likely benign (Jan 07, 2025)
1-11658758-G-A		not specified	Uncertain significance (Jul 13, 2022)
1-11658762-C-T		not specified	Uncertain significance (Dec 20, 2023)
1-11658779-G-A		not specified	Uncertain significance (Jun 02, 2023)
1-11658793-G-A		not specified	Likely benign (Feb 20, 2025)
1-11658796-C-T		not specified	Likely benign (Oct 02, 2023)
1-11658797-G-A		not specified	Uncertain significance (Jun 25, 2024)
1-11658798-C-T		not specified	Uncertain significance (Dec 31, 2024)
1-11658839-A-G		not specified	Uncertain significance (Jun 26, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FBXO44	protein_coding	protein_coding	ENST00000376770	5	8953

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000211	0.719	125719	0	28	125747	0.000111

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.353	159	172	0.924	0.0000120	1672
Missense in Polyphen		82	80.962	1.0128		809
Synonymous	-0.107	83	81.8	1.01	0.00000651	491
Loss of Function	1.16	11	16.0	0.688	8.39e-7	147

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000581	0.0000581
Ashkenazi Jewish	0.0000998	0.0000992
East Asian	0.000217	0.000217
Finnish	0.0000924	0.0000924
European (Non-Finnish)	0.000124	0.000123
Middle Eastern	0.000217	0.000217
South Asian	0.000163	0.000163
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Substrate-recognition component of the SCF (SKP1-CUL1-F- box protein)-type E3 ubiquitin ligase complex.
• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Intolerance Scores

• loftool: 0.937
• rvis_EVS: 0.22
• rvis_percentile_EVS: 68.38

Haploinsufficiency Scores

• pHI: 0.165
• hipred: Y
• hipred_score: 0.621
• ghis: 0.678

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.662

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fbxo44
• Phenotype: behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan)

Gene ontology

• Biological process: protein polyubiquitination;proteasomal protein catabolic process;post-translational protein modification
• Cellular component: cytosol;SCF ubiquitin ligase complex
• Molecular function: ubiquitin-protein transferase activity;protein binding