FCGR2C

Fc gamma receptor IIc (gene/pseudogene), the group of CD molecules|Fc receptors|Immunoglobulin like domain containing

Basic information

Region (hg38): 1:161581339-161605662

Links

ENSG00000244682 ∙ NCBI:9103 ∙ OMIM:612169 ∙ HGNC:15626 ∙ Uniprot:P31995 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FCGR2C gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FCGR2C gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			21	3		24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	21	3	0

Variants in FCGR2C

This is a list of pathogenic ClinVar variants found in the FCGR2C region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-161589568-C-T		not specified	Likely benign (Dec 03, 2024)
1-161589570-C-A		not specified	Uncertain significance (Feb 21, 2024)
1-161589571-C-T		not specified	Uncertain significance (Jul 14, 2021)
1-161589594-C-G		not specified	Uncertain significance (Sep 16, 2021)
1-161589595-C-A		not specified	Uncertain significance (Aug 04, 2024)
1-161589608-C-G		not specified	Uncertain significance (Aug 11, 2024)
1-161589665-C-G		not specified	Uncertain significance (Oct 25, 2023)
1-161589676-C-A		not specified	Likely benign (Jan 01, 2023)
1-161589705-A-G		not specified	Uncertain significance (Sep 18, 2024)
1-161589712-C-T		not specified	Uncertain significance (Aug 24, 2023)
1-161589753-G-A		not specified	Uncertain significance (Feb 06, 2023)
1-161589786-C-T		not specified	Uncertain significance (Feb 28, 2024)
1-161591195-T-A		not specified	Uncertain significance (Nov 03, 2022)
1-161591197-G-A		not specified	Likely benign (Aug 08, 2022)
1-161591215-T-C		not specified	Uncertain significance (Jan 06, 2023)
1-161591221-G-T		not specified	Uncertain significance (May 31, 2023)
1-161591278-C-T		not specified	Uncertain significance (Aug 04, 2021)
1-161591282-C-T		not specified	Likely benign (Feb 07, 2023)
1-161591291-A-C		not specified	Uncertain significance (Jun 29, 2023)
1-161591302-C-T		not specified	Uncertain significance (Jul 27, 2021)
1-161591323-A-G		not specified	Uncertain significance (Jul 31, 2024)
1-161591360-C-T		not specified	Uncertain significance (Sep 27, 2022)
1-161591390-C-A		not specified	Uncertain significance (Sep 01, 2021)
1-161595553-C-G		not specified	Uncertain significance (Nov 15, 2021)
1-161595561-A-C		not specified	Uncertain significance (Nov 15, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FCGR2C	polymorphic_pseudogene	protein_coding	ENST00000543859	1	24324

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.20	45	27.4	1.64	0.00000117	372
Missense in Polyphen
Synonymous	-2.35	22	11.7	1.87	5.88e-7	122
Loss of Function

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish
East Asian
Finnish
European (Non-Finnish)
Middle Eastern
South Asian
Other

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Receptor for the Fc region of complexed immunoglobulins gamma. Low affinity receptor. Involved in a variety of effector and regulatory functions such as phagocytosis of immune complexes and modulation of antibody production by B-cells.
• Pathway: Phagosome - Homo sapiens (human);Staphylococcus aureus infection - Homo sapiens (human);Tuberculosis - Homo sapiens (human);Leishmaniasis - Homo sapiens (human);Osteoclast differentiation - Homo sapiens (human);Neutrophil degranulation;FCGR activation;Role of phospholipids in phagocytosis;Fcgamma receptor (FCGR) dependent phagocytosis;Innate Immune System;Immune System;Regulation of actin dynamics for phagocytic cup formation;Signaling events mediated by PTP1B;Beta2 integrin cell surface interactions (Consensus)

Recessive Scores

• pRec: 0.125

Gene ontology

• Biological process: immune response
• Cellular component: cytoplasm;plasma membrane;integral component of membrane
• Molecular function: transmembrane signaling receptor activity;protein binding;IgG binding