FFAR3

protein-coding

free fatty acid receptor 3, the group of Free fatty acid receptors

Gene summary

Enables G protein-coupled receptor activity. Involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and cellular response to fatty acid. Located in plasma membrane. [provided by Alliance of Genome Resources, Jul 2025]

Previous symbols:
  • GPR41

MANE transcript

NM_005304.5

Inheritance

—

ClinVar variants

U:73B:9

Top phenotype

—

gnomAD constraint

pLI —, LoF o/e 1.17

Max pathogenic AF

—

Genomic locus

chr19:35,358,460-35,360,489

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~2.0 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

No GenCC data available for this gene.

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to FFAR3 variants in ClinVar

2 Conditions Cataloged
not specifiedTotal: 79
not providedTotal: 2

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_005304.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
2
clinvar
2
missense
73
clinvar
7
clinvar
80
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
0
Total00739082
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 6 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_005304.5RefSeqNP_005295.11MANE Select
ENST00000327809.5EnsemblENSP00000328230.31MANE Select
ENST00000594310.1EnsemblENSP00000469522.11Standard
ENST00000965195.1EnsemblENSP00000635254.11Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • SCFA and skeletal muscle substrate metabolism
  • GPCRs, Class A Rhodopsin-like
  • Signaling by GPCR
  • Signal Transduction
  • Free fatty acid receptors

Biological Process

  • mucosal immune response
  • positive regulation of cytokine production involved in immune response
  • positive regulation of acute inflammatory response to non-antigenic stimulus
  • inflammatory response
  • G protein-coupled receptor signaling pathway

Molecular Function

  • G protein-coupled receptor activity
  • lipid binding

Cellular Component

  • plasma membrane
  • integral component of plasma membrane

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000327809
Coding exons
1
Length
2026
Individuals with no LoFs
125708
Homozygous LoFs
0
Heterozygous LoFs
22
Defined
125730
p
0.0000875
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.03051951960.9940.00001212142
Missense (PolyPhen)5453.3151.0129621
Synonymous0.4448691.40.9410.00000600715
Loss of Function-0.32154.281.171.84e-743

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000190.00018rare
Latino/Admixed American0.0000590.000058rare
Ashkenazi Jewish0.000100.000099rare
East Asian0.000440.00044rare
Finnish00.0absent
European (Non-Finnish)0.0000380.000035rare
South Asian0.0000660.000065rare
Other0.000330.00033rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: G protein-coupled receptor that is activated by a major product of dietary fiber digestion, the short chain fatty acids (SCFAs), and that plays a role in the regulation of whole-body energy homeostasis and in intestinal immunity. In omnivorous mammals, the short chain fatty acids acetate, propionate and butyrate are produced primarily by the gut microbiome that metabolizes dietary fibers. SCFAs serve as a source of energy but also act as signaling molecules. That G protein-coupled receptor is probably coupled to the pertussis toxin-sensitive, G(i/o)-alpha family of G proteins. Its activation results in the formation of inositol 1,4,5-trisphosphate, the mobilization of intracellular calcium, the phosphorylation of the MAPK3/ERK1 and MAPK1/ERK2 kinases and the inhibition of intracellular cAMP accumulation (PubMed:12711604). Activated by SCFAs and by beta-hydroxybutyrate, a ketone body produced by the liver upon starvation, it inhibits N-type calcium channels and modulates the activity of sympathetic neurons through a signaling cascade involving the beta and gamma subunits of its coupled G protein, phospholipase C and MAP kinases. Thereby, it may regulate energy expenditure through the control of the sympathetic nervous system that controls for instance heart rate. Upon activation by SCFAs accumulating in the intestine, it may also signal to the brain via neural circuits which in turn would regulate intestinal gluconeogenesis. May also control the production of hormones involved in whole-body energy homeostasis. May for instance, regulate blood pressure through renin secretion. May also regulate secretion of the PYY peptide by enteroendocrine cells and control gut motility, intestinal transit rate, and the harvesting of energy from SCFAs produced by gut microbiota. May also indirectly regulate the production of LEP/Leptin, a hormone acting on the CNS to inhibit food intake, in response to the presence of short-chain fatty acids in the intestine. Finally, may also play a role in glucose homeostasis. Besides its role in energy homeostasis, may play a role in intestinal immunity. May mediate the activation of the inflammatory and immune response by SCFAs in the gut, regulating the rapid production of chemokines and cytokines by intestinal epithelial cells. Among SCFAs, the fatty acids containing less than 6 carbons, the most potent activators are probably propionate, butyrate and pentanoate while acetate is a poor activator (PubMed:12496283, PubMed:12711604). {ECO:0000269|PubMed:12496283, ECO:0000269|PubMed:12711604, ECO:0000269|PubMed:18801738, ECO:0000269|PubMed:23066016}.;

Recessive Scores

pRec
0.100

Intolerance Scores

LoFtool
0.660
RVIS EVS
0.15
RVIS percentile EVS
64.74

Essentials

Essential (CRISPR)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.114

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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