FHOD3

protein-coding

formin homology 2 domain containing 3, the group of Formins|Armadillo like helical domain containing

Gene summary

The protein encoded by this gene is a member of the diaphanous-related formins (DRF), and contains multiple domains, including GBD (GTPase-binding domain), DID (diaphanous inhibitory domain), FH1 (formin homology 1), FH2 (formin homology 2), and DAD (diaphanous auto-regulatory domain) domains. This protein is thought to play a role in actin filament polymerization in cardiomyocytes. Mutations in this gene have been associated with dilated cardiomyopathy (DCM), characterized by dilation of the ventricular chamber, leading to impairment of systolic pump function and subsequent heart failure. Increased levels of the protein encoded by this gene have been observed in individuals with hypertrophic cardiomyopathy (HCM). Alternative splicing results in multiple transcript variants encoding different isoforms. A muscle-specific isoform has been shown to possess a casein kinase 2 (CK2) phosphorylation site at the C-terminal end of the FH2 domain. Phosphorylation of this site alters its interaction with sequestosome 1 (SQSTM1), and targets this isoform to myofibrils, while other isoforms form cytoplasmic aggregates. [provided by RefSeq, Aug 2015]

MANE transcript

NM_001281740.3

Inheritance

AD

ClinVar variants

P:9U:337B:214

Top phenotype

Cardiomyopathy, familial hypertrophic, 28

gnomAD constraint

pLI —, LoF o/e 0.25

Max pathogenic AF

—

Genomic locus

chr18:36,297,713-36,780,220

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~482.5 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

cardiomyopathy, familial hypertrophic, 28STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0030317

Submitter: Labcorp Genetics (formerly Invitae)

cardiomyopathy, familial hypertrophic, 28STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0030317

Submitter: PanelApp Australia

hypertrophic cardiomyopathyMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0005045

Submitter: Illumina

The FHOD3 gene is located on chromosome 18 at 18q12.2 and encodes the formin homology 2 domain containing 3, which is associated with actin organization. The FHOD3 gene was first reported in relation to autosomal dominant hypertrophic cardiomyopathy in 2018 (30442288: Ochoa et al. 2018). Evidence supporting this gene-disease relationship includes case-level data and experimental data. Variants in this gene have been reported in at least five unrelated probands in two publications (30442288: Ochoa et al. 2018; 31742804: Huang et al. 2019). Variants in this gene segregated with disease in one large seven-generation family and in multiple nuclear families (30442288: Ochoa et al. 2018). The mechanism of disease has not been clearly defined, but both missense and in-frame deletion variants have been associated with disease (30442288: Ochoa et al. 2018; 31742804: Huang et al. 2019). This gene-disease relationship is supported by expression data in the developing heart and sarcomeres and functional alteration in non-patient cells demonstrating impaired myofibril maintenance and defective polymerization of actin filaments in cardiomyocytes (21149568: Iskratsch et al. 2010; 26848968: Fujimoto et al. 2016). Rescue experiments in cultured cardiomyocytes and a transgenic mouse line also support a role for FHOD3 in the developing sarcomere (19706596: Taniguchi et al. 2009; 26848968: Fujimoto et al. 2016). In summary, there is moderate evidence to support this gene-disease relationship. While more evidence is needed to establish this relationship definitively, no convincing contradictory evidence has emerged.

hypertrophic cardiomyopathyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0005045

Submitter: G2P

hypertrophic cardiomyopathyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0005045

Submitter: ClinGen

FHOD3 was first reported in relation to autosomal dominant hypertrophic cardiomyopathy in 2018 (Ochoa et al., PMID: 30442288). Over 50 variants (missense, nonsense, splice variants and in frame del/dup variants) that have been reported in over 100 probands in 6 publications (PMIDs: 29907873, 30442288, 30898215, 31742804, 32335906, 33586461) are included in this curation. The majority of variants are located at exon 12 and exon 15, including two recurring variants p.Ser527del and p.Tyr528Cys in exon 12. Most reported variants are missense with a smaller number of truncating, CNV and splice variants identified at these locations. Two CNVs were too large to be registered, an 11kb deletion from c.1836-1527 in intron 14 to c.2022-2042 in intron 16 and an 11kb deletion c.1836-2543 in intron 14 to c.2021+2217 in intron 16, but contribute 0.25 points each to the overall score (Ochoa JP, et al., 2020, PMID: 32335906). The mechanism of pathogenicity is unknown. This gene-disease relationship is also supported by expression studies, protein interaction, functional alteration and animal models (PMIDs: 15966898, 19706596, 29158260, 29686099, 23213483). However, it should be noted that while experimental studies have shown an important role for FHOD3 in heart and sarcomeric development, no studies have demonstrated a clear HCM phenotype. In summary, there is definitive evidence supporting the relationship between FHOD3 and autosomal dominant hypertrophic cardiomyopathy. This has been repeatedly demonstrated in both the research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen Hereditary Cardiovascular Diseases GCEP on the meeting date September 29, 2023 (SOP Version 9).

cardiomyopathy, familial hypertrophic, 28STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0030317

Submitter: Ambry Genetics

Clinical Genomic Database (CGD)

Cardiomyopathy, familial hypertrophic, 28AD

Manifestation: Cardiovascular

Intervention: Cardiovascular

Rationale: The condition can include cardiomyopathy and/or arrhthymias, and awareness may allow early diagnosis and management

Refs: 30442288; 31742804; 32335906Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to FHOD3 variants in ClinVar

13 Conditions Cataloged
not specifiedTotal: 215
Inborn genetic diseasesTotal: 198
not providedTotal: 155
FHOD3-related disorderTotal: 147
Cardiomyopathy, familial hypertrophic, 28Total: 43
Cardiovascular phenotypeTotal: 31
Hypertrophic cardiomyopathyTotal: 11
FHOD3-related disordersTotal: 5

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001281740.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
3
clinvar
131
clinvar
5
clinvar
139
missense
3
clinvar
308
clinvar
75
clinvar
2
clinvar
388
nonsense
11
clinvar
1
clinvar
12
start loss
0
frameshift
6
clinvar
6
splice donor/acceptor (+/-2bp)
6
clinvar
9
clinvar
15
Total093372068560

Highest pathogenic variant AF is 0.0000039091565

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 102 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001281740.3RefSeqNP_001268669.129MANE Select
ENST00000590592.6EnsemblENSP00000466937.129MANE Select
NM_001281739.3RefSeqNP_001268668.124Standard
NM_025135.5RefSeqNP_079411.225Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Biological Process

  • actin filament organization
  • negative regulation of actin filament polymerization
  • sarcomere organization
  • cardiac myofibril assembly

Molecular Function

  • actin binding
  • protein binding

Cellular Component

  • striated muscle thin filament
  • Z disc

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000257209
Coding exons
25
Length
482342
Individuals with no LoFs
125702
Homozygous LoFs
0
Heterozygous LoFs
46
Defined
125748
p
0.000183
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.8767428120.9130.00004709331
Missense (PolyPhen)330375.330.879224462
Synonymous-0.2823503431.020.00002162849
Loss of Function5.631665.00.2460.00000344794

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.000270.00026rare
Ashkenazi Jewish0.000100.000099rare
East Asian0.000110.00011rare
Finnish0.0000950.000092rare
European (Non-Finnish)0.000200.00019rare
South Asian0.000420.00029rare
Other0.000160.00016rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Actin-organizing protein that may cause stress fiber formation together with cell elongation (By similarity). Isoform 4 may play a role in actin filament polymerization in cardiomyocytes. {ECO:0000250, ECO:0000269|PubMed:21149568}.;

Recessive Scores

pRec
0.104

Intolerance Scores

LoFtool
0.569
RVIS EVS
-0.51
RVIS percentile EVS
21.22

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.152

Gene Damage Prediction

AllRecessiveDominant
MendelianHighHighHigh
Primary ImmunodeficiencyHighHighHigh
CancerHighHighHigh
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.