FIBIN

fin bud initiation factor homolog

Basic information

Region (hg38): 11:26994111-26997087

Links

ENSG00000176971 ∙ NCBI:387758 ∙ OMIM:617085 ∙ HGNC:33747 ∙ Uniprot:Q8TAL6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FIBIN gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FIBIN gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			11	1		12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	11	1	1

Variants in FIBIN

This is a list of pathogenic ClinVar variants found in the FIBIN region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-26994549-G-T		not specified	Uncertain significance (Dec 03, 2021)
11-26994554-A-G		not specified	Likely benign (May 04, 2023)
11-26994617-G-A		not specified	Uncertain significance (Dec 02, 2022)
11-26994718-C-T			Benign (Jun 29, 2018)
11-26994737-C-G		not specified	Uncertain significance (Jan 23, 2023)
11-26994785-C-G		not specified	Uncertain significance (Mar 25, 2024)
11-26994801-A-G		not specified	Uncertain significance (Sep 14, 2021)
11-26994857-G-A		not specified	Uncertain significance (Jan 26, 2022)
11-26994878-T-C		not specified	Uncertain significance (Apr 29, 2024)
11-26994885-G-C		not specified	Uncertain significance (Oct 16, 2023)
11-26994896-C-T		not specified	Uncertain significance (May 24, 2023)
11-26994900-A-G		not specified	Uncertain significance (Feb 01, 2023)
11-26994914-T-C		not specified	Uncertain significance (May 20, 2024)
11-26994950-A-G		not specified	Uncertain significance (May 11, 2022)
11-26995121-A-T		not specified	Uncertain significance (Nov 02, 2023)
11-26995146-A-C		not specified	Uncertain significance (Nov 17, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FIBIN	protein_coding	protein_coding	ENST00000318627	1	3003

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.416	0.552	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.305	115	125	0.923	0.00000714	1386
Missense in Polyphen		42	50.224	0.83625		557
Synonymous	0.574	52	57.5	0.904	0.00000342	420
Loss of Function	1.71	1	5.20	0.192	2.20e-7	63

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.105

Intolerance Scores

• loftool: 0.184
• rvis_EVS: -0.07
• rvis_percentile_EVS: 48.12

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.352
• ghis: 0.574

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.307

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fibin

Zebrafish Information Network

• Gene name: fibinb
• Affected structure: pectoral fin field
• Phenotype tag: abnormal
• Phenotype quality: morphology

Gene ontology

• Biological process: biological_process;response to manganese ion;protein kinase C signaling;response to dexamethasone
• Cellular component: cellular_component;extracellular region;endoplasmic reticulum;Golgi apparatus
• Molecular function: molecular_function;protein homodimerization activity