FIZ1

FLT3 interacting zinc finger 1, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:55591376-55601970

Links

ENSG00000179943 ∙ NCBI:84922 ∙ OMIM:609133 ∙ HGNC:25917 ∙ Uniprot:Q96SL8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FIZ1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FIZ1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			27			27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	27	0	0

Variants in FIZ1

This is a list of pathogenic ClinVar variants found in the FIZ1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-55592710-T-G		not specified	Uncertain significance (Nov 24, 2024)
19-55592719-C-T		not specified	Uncertain significance (Mar 06, 2023)
19-55592758-C-T		not specified	Uncertain significance (Jun 26, 2024)
19-55592778-T-G		not specified	Uncertain significance (Jul 09, 2021)
19-55592821-C-G		not specified	Uncertain significance (Nov 07, 2023)
19-55592827-C-T		not specified	Uncertain significance (Nov 10, 2022)
19-55592884-A-C		not specified	Uncertain significance (Dec 08, 2023)
19-55592893-C-T		not specified	Uncertain significance (Mar 01, 2024)
19-55592982-G-T		not specified	Uncertain significance (Sep 22, 2022)
19-55593040-C-T		not specified	Uncertain significance (Dec 07, 2021)
19-55593043-C-T		not specified	Uncertain significance (Jul 13, 2021)
19-55593057-A-C		not specified	Uncertain significance (Aug 10, 2015)
19-55593136-C-T		not specified	Uncertain significance (Aug 08, 2023)
19-55593190-C-A		not specified	Uncertain significance (Feb 27, 2024)
19-55593196-T-C		not specified	Uncertain significance (Jun 04, 2024)
19-55593198-A-C		not specified	Uncertain significance (Jun 01, 2023)
19-55593249-G-T		not specified	Uncertain significance (Dec 02, 2022)
19-55593274-T-G		not specified	Uncertain significance (May 05, 2023)
19-55593283-C-T		not specified	Uncertain significance (Feb 22, 2023)
19-55593325-C-T		not specified	Uncertain significance (Sep 13, 2023)
19-55593339-G-A		not specified	Uncertain significance (Feb 28, 2024)
19-55593343-A-G		not specified	Uncertain significance (Oct 12, 2022)
19-55593355-A-C		not specified	Uncertain significance (Nov 21, 2023)
19-55593364-C-T		not specified	Uncertain significance (Oct 25, 2023)
19-55593393-C-T		not specified	Uncertain significance (Apr 27, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FIZ1	protein_coding	protein_coding	ENST00000221665	2	10591

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.526	0.471	122477	0	3	122480	0.0000122

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.50	125	294	0.425	0.0000232	3035
Missense in Polyphen		18	56.512	0.31852		542
Synonymous	1.27	122	141	0.864	0.0000120	1075
Loss of Function	2.46	2	10.7	0.187	5.39e-7	133

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000872	0.0000872
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be a transcriptional repressor of NRL function in photoreceptors. Does not repress CRX-mediated transactivation (By similarity). {ECO:0000250}.

Recessive Scores

• pRec: 0.129

Haploinsufficiency Scores

• pHI: 0.192
• hipred: N
• hipred_score: 0.335
• ghis: 0.410

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.840

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fiz1

Gene ontology

• Biological process: positive regulation of protein phosphorylation;regulation of transcription by RNA polymerase II
• Cellular component: nucleus;cytoplasm
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;nucleic acid binding;receptor tyrosine kinase binding;metal ion binding