FOXJ2

forkhead box J2, the group of Forkhead boxes

Basic information

Region (hg38): 12:8032716-8055517

Links

ENSG00000065970 ∙ NCBI:55810 ∙ OMIM:619162 ∙ HGNC:24818 ∙ Uniprot:Q9P0K8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FOXJ2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FOXJ2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			42	1		43
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	42	1	0

Variants in FOXJ2

This is a list of pathogenic ClinVar variants found in the FOXJ2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-8039933-G-A		not specified	Uncertain significance (Oct 20, 2024)
12-8040013-G-A		not specified	Uncertain significance (Jul 27, 2024)
12-8040013-G-T		not specified	Uncertain significance (Jul 20, 2021)
12-8040017-A-G		not specified	Uncertain significance (Dec 26, 2023)
12-8040035-G-A		not specified	Uncertain significance (Feb 27, 2024)
12-8040047-C-T		not specified	Uncertain significance (Apr 20, 2024)
12-8043713-A-T		not specified	Uncertain significance (Feb 11, 2022)
12-8043716-A-G		not specified	Uncertain significance (Feb 23, 2023)
12-8043717-T-C		not specified	Uncertain significance (May 31, 2024)
12-8043728-C-T		not specified	Uncertain significance (May 01, 2024)
12-8043758-C-T		not specified	Uncertain significance (Aug 14, 2023)
12-8043976-A-T		not specified	Uncertain significance (Jan 04, 2024)
12-8043993-C-T		not specified	Uncertain significance (Apr 09, 2024)
12-8044002-G-A		not specified	Uncertain significance (May 25, 2022)
12-8044045-C-T		not specified	Uncertain significance (Dec 13, 2022)
12-8044799-G-C		not specified	Uncertain significance (Jun 12, 2023)
12-8044811-G-A		not specified	Uncertain significance (Mar 07, 2025)
12-8044854-A-G		not specified	Uncertain significance (Apr 04, 2024)
12-8044858-T-A		not specified	Uncertain significance (Aug 08, 2023)
12-8044881-A-G		not specified	Uncertain significance (May 26, 2024)
12-8044887-A-G		not specified	Uncertain significance (Dec 01, 2022)
12-8044913-C-T		not specified	Uncertain significance (Nov 13, 2024)
12-8044923-C-G		not specified	Uncertain significance (Oct 19, 2024)
12-8044929-T-G		not specified	Uncertain significance (Dec 28, 2022)
12-8044950-C-G		not specified	Uncertain significance (Mar 01, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FOXJ2	protein_coding	protein_coding	ENST00000162391	10	22801

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.998	0.00154	125741	0	7	125748	0.0000278

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.825	285	327	0.872	0.0000176	3725
Missense in Polyphen		127	158.69	0.80028		1793
Synonymous	0.0837	120	121	0.990	0.00000645	1141
Loss of Function	4.76	3	32.1	0.0935	0.00000183	313

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000124	0.000123
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000467	0.0000439
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Transcriptional activator. Able to bind to two different type of DNA binding sites. Isoform FOXJ2.L behaves as a more potent transactivator than FOXJ2.S.

Recessive Scores

• pRec: 0.136

Intolerance Scores

• loftool: 0.0522
• rvis_EVS: -0.6
• rvis_percentile_EVS: 18.06

Haploinsufficiency Scores

• pHI: 0.810
• hipred: Y
• hipred_score: 0.501
• ghis: 0.555

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0548

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Foxj2

Gene ontology

• Biological process: negative regulation of angiogenesis;positive regulation of transcription by RNA polymerase II;negative regulation of blood vessel endothelial cell differentiation;positive regulation of vascular smooth muscle cell proliferation
• Cellular component: fibrillar center;nucleus
• Molecular function: RNA polymerase II proximal promoter sequence-specific DNA binding;DNA-binding transcription factor activity, RNA polymerase II-specific;DNA-binding transcription activator activity, RNA polymerase II-specific;protein binding;identical protein binding