FSCB

fibrous sheath CABYR binding protein

Basic information

Region (hg38): 14:44504149-44507283

Previous symbols: [ "C14orf155" ]

Links

ENSG00000189139 ∙ NCBI:84075 ∙ OMIM:611779 ∙ HGNC:20494 ∙ Uniprot:Q5H9T9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

• Tourette syndrome (Limited), mode of inheritance: Unknown

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FSCB gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FSCB gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2	1	3
missense			44	6		50
nonsense				1		1
start loss						0
frameshift						0
inframe indel				1	1	2
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	44	10	2

Variants in FSCB

This is a list of pathogenic ClinVar variants found in the FSCB region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-44504544-T-C		not specified	Uncertain significance (Oct 14, 2021)
14-44504916-G-A		not specified	Uncertain significance (Feb 21, 2024)
14-44504920-T-C		not specified	Likely benign (Jan 03, 2024)
14-44504920-TCTCCTCAGCTGGTAGAGACTGAACTTCAGCAGGGGC-T			Likely benign (Aug 04, 2017)
14-44504924-C-A		not specified	Uncertain significance (Aug 12, 2021)
14-44504926-C-T		not specified	Uncertain significance (Oct 03, 2024)
14-44504929-C-T		not specified	Uncertain significance (Jun 25, 2024)
14-44504932-G-A		not specified	Uncertain significance (Nov 25, 2024)
14-44504951-A-AGGGGCCTCCTCAGCTGGTGGAGGCTGAACTTCAGAG			Benign (Dec 31, 2019)
14-44504955-G-T		not specified	Uncertain significance (Oct 29, 2024)
14-44504956-C-A		not specified	Uncertain significance (Jan 27, 2022)
14-44504956-C-T		not specified	Uncertain significance (Dec 28, 2022)
14-44504967-G-A		not specified	Uncertain significance (Mar 12, 2024)
14-44504971-G-T		not specified	Uncertain significance (Oct 06, 2024)
14-44504974-G-A		not specified	Likely benign (Jan 22, 2024)
14-44504974-G-C		not specified	Uncertain significance (Nov 05, 2021)
14-44504974-G-T		not specified	Uncertain significance (Nov 08, 2024)
14-44504976-T-C		not specified	Uncertain significance (Mar 15, 2024)
14-44504979-A-G		not specified	Uncertain significance (Oct 09, 2024)
14-44504981-T-A		not specified	Uncertain significance (Jan 22, 2024)
14-44504982-T-C		not specified	Uncertain significance (Mar 19, 2024)
14-44504992-C-T		not specified	Uncertain significance (Sep 24, 2024)
14-44505024-G-A		not specified	Uncertain significance (Mar 18, 2024)
14-44505083-C-T			Likely benign (Jul 01, 2022)
14-44505090-T-C		not specified	Uncertain significance (Jun 03, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FSCB	protein_coding	protein_coding	ENST00000340446	1	2938

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.830	456	409	1.12	0.0000197	5250
Missense in Polyphen		71	52.382	1.3554		771
Synonymous	-0.0129	149	149	1.00	0.00000752	1787
Loss of Function

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish
East Asian
Finnish
European (Non-Finnish)
Middle Eastern
South Asian
Other

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in the later stages of fibrous sheath biogenesis and spermatozoa capacitation. Inhibits ROPN1 and ROPN1L SUMOylation. Binds calcium. {ECO:0000250|UniProtKB:A1EGX6}.

Recessive Scores

• pRec: 0.0673

Intolerance Scores

• loftool: 0.969
• rvis_EVS: 1.98
• rvis_percentile_EVS: 97.63

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.146

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.111

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fscb

Gene ontology

• Biological process: negative regulation of protein sumoylation
• Cellular component: motile cilium