FTH1
protein-codingferritin heavy chain 1, the group of Ferritin subunits
Gene summary
This gene encodes the heavy subunit of ferritin, the major intracellular iron storage protein in prokaryotes and eukaryotes. It is composed of 24 subunits of the heavy and light ferritin chains. Variation in ferritin subunit composition may affect the rates of iron uptake and release in different tissues. A major function of ferritin is the storage of iron in a soluble and nontoxic state. Defects in ferritin proteins are associated with several neurodegenerative diseases. This gene has multiple pseudogenes. Several alternatively spliced transcript variants have been observed, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]
- FTHL6
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~7.9 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0014225
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0958012
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0958012
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0014225
Submitter: ClinGen
The FTH1 gene codes for the ferritin heavy chain. Synthesis of both heavy H- type and light L- type ferritin subunits is controlled by a common cytosolic protein known as iron regulatory protein (IRP), which binds to the iron-responsive element (IRE) in the 5′-UTR of the H- and L-ferritin mRNAs (PMID:11389486). The H subunit is known to generate a ferroxidase activity that is essential for the incorporation of iron into the ferritin molecule, contributing to the maintenance of the redox status of the cells by removing Fe (II). Improperly coordinated Fe (II) has the potential to convert hydrogen peroxide and superoxide into the highly toxic hydroxyl radical, which can attack proteins, lipids, and DNA causing oxidation, fragmentation and crosslinking leading to their loss of function. Variants in FTH1 have been reported in individuals with the following disease entities: Hemochromatosis type 5 (HFE5) (MIM#0014225) and Neurodegeneration with brain iron accumulation 9(NBIA9) (MIM#0958012). As per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found the two disease entities do not exhibit phenotypic overlap and are inconsistent with a single spectrum of disease while both being autosomal dominantly inherited. Summary of case- based evidence: One variant in the IRE region of H-subunit mRNA has been reported in association with hemochromatosis type 5 in three members of a Japanese family affected with dominantly inherited iron overload (PMID:11389486). Summary of experimental evidence: This gene-disease association is supported by experimental evidence from the study on an iron-uptake assay using the COS-1 transfectants, which suggests the A49U mutation of H subunit would affect not only its own translation but also that of the L subunit and that the decrease in H subunit not only impaired iron uptake into the ferritin molecule but also caused iron accumulation in the cytosol, possibly because of the decrease in ferroxidase activity (PMID:11389486). The iron storage function of ferritin plays a major role in preventing iron-mediated cell and tissue damage. (PMID: 19492434). Study on H-ferritin gene–knockout mice showed early embryonic lethality due to massive iron deposition (PMID: 11468145). The studies on kinetics of iron oxidation and uptake of ferritin purified from human liver and of the engineered mutant H-chain observed that the deletion at the carboxyl terminus prevents the formation of a stable iron core suggesting that the ferritin H-chain has an iron oxidation site which is separated from the sites of iron transfer and hydrolysis (PMID:3192527). A study on Hydroxyl radical spin-trapping experiments showed that H-chain ferritin greatly attenuates hydroxyl radical generation from the Fenton reaction and that the ferroxidase site is responsible for this activity. The presence of wild-type human H-chain ferritin HuHF during Fe2+ oxidation by H2O2 greatly decreases the amount of OH- radical produced from Fenton chemistry whereas the ferroxidase site mutant 222 (H62K + H65G) and human L-chain ferritin (HuLF) lack this activity. This data relates to the pathogenesis mechanism in the patients as well where the ferroxidase activity of H-ferritin is lost and there is increase in the serum iron levels (PMID:16519538). In summary, there is limited evidence supporting the relationship between FTH1 and susceptibility to Hemochromatosis type 5. This classification was approved by the ClinGen IEM GCEP at the meeting on August 8, 2025 (SOP Version 11).
Inheritance Pattern: AD
Disease ID:MONDO:0014225
Submitter: PanelApp Australia
Inheritance Pattern: Unknown
Disease ID:MONDO:0014225
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0014225
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0014225
Submitter: Genomics England PanelApp
Inheritance Pattern: AD
Disease ID:MONDO:0958012
Submitter: ClinGen
The *FTH1* gene encodes the ferritin heavy chain. The heavy chain is responsible for ferroxidase activity, and it has also been implicated in iron delivery to the brain predominantly in the neurons (PMID:37660254). Variants in *FTH1* have been reported in individuals with the following disease entities: Hemochromatosis type 5 (HFE5) (MIM#0014225) and Neurodegeneration with brain iron accumulation 9(NBIA9) (MIM#0958012). As per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found the two disease entities do not exhibit phenotypic overlap and are inconsistent with a single spectrum of disease while both being autosomal dominantly inherited. Genetic disorders such as neurodegeneration with brain iron accumulation (NBIA), have been linked to disruption of iron homeostasis in the brain has been often present at early age with neurodevelopmental deficits progressing to neurodegeneration. Commonly affected anatomical areas being the basal ganglia, particularly the globus pallidum and substantia nigra. Summary of case- based evidence: Two de novo nonsense heterozygous variants in the last coding exon of *FTH1* in five unrelated children were observed with characteristic clinical and imaging findings (PMID:37660254). The variants escape Nonsense Mediated Decay (NMD) and lead to ferritin accumulation on neuropathology, neuroimaging findings consistent with NBIA, and cellular markers of oxidative stress. Also, an additional study observed that distinct neuropathology with ferritin-positive IB, the absence of the variant in the healthy population and the absence of likely pathogenic variants in other genes associated with NBIA, the variant in *FTH1*(c.409_410del; p.H137Lfs4) is causative for the pathological findings in the patient (PMID:37265023). Summary of experimental evidence: The gene-disease association is supported by experimental studies on patient-derived fibroblasts, assayed for ferritin expression, susceptibility to iron accumulation, and oxidative stress suggesting that variant *FTH1* mRNA transcripts escape NMD, and fibroblasts show elevated ferritin protein levels, markers of oxidative stress, and increased susceptibility to iron accumulation. *FTH1* pathogenic variants appear to act by a dominant, toxic gain-of-function mechanism. Further, targeted knockdown of mutant *FTH1* transcript with antisense oligonucleotides rescues cellular phenotypes and suggests a potential therapeutic strategy for this pediatric neurodegenerative disorder (PMID:37660254). The data support that truncating variants in the last exon of *FTH1* cause a disorder in the spectrum of NBIA. Another study on Iron homeostasis in Ferritin knock out mice, suggests that single allele expressing the H subunit is not sufficient for survival when both alleles encoding the L subunit are absent, suggesting the need for some degree of complementation between the subunits as well as a dosage effect (PMID: 25629408). Studies on mutant mouse liver cells with alterations in terminal E-helix abolished the capacity of ferritin to incorporate iron during expression in the cells, probably caused by conformational modification of the hydrophobic channels (PMID:16751596). In summary, there is moderate level of evidence supporting the relationship between *FTH1* and susceptibility neurodegeneration with brain iron accumulation (NBIA). This classification was approved by the ClinGen IEM GCEP at the meeting on September 12, 2025 (SOP Version 11).
Clinical Genomic Database (CGD)
Manifestation: Hematologic; Neurologic
Intervention: Hematologic
Rationale: Preventive measures to ameliorate iron overload may be beneficial
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to FTH1 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_002032.3. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 10 | 3 | 14 | ||
| missense | 33 | 3 | 36 | |||
| nonsense | 1 | 3 | 4 | |||
| start loss | 0 | |||||
| frameshift | 1 | 2 | 2 | 5 | ||
| splice donor/acceptor (+/-2bp) | 4 | 4 | ||||
| Total | 2 | 2 | 43 | 13 | 3 | 63 |
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_002023.2 | 4 | MANE Select | |
| Ensembl | ENSP00000273550.7 | 4 | MANE Select | |
| Ensembl | ENSP00000433321.1 | 4 | Standard | |
| Ensembl | ENSP00000431659.1 | 2 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Necroptosis - Homo sapiens (human)
- Mineral absorption - Homo sapiens (human)
- Ferroptosis - Homo sapiens (human)
- Iron metabolism in placenta
- Nuclear Receptors Meta-Pathway
Biological Process
- cellular iron ion homeostasis
- intracellular sequestering of iron ion
- immune response
- negative regulation of cell population proliferation
- neutrophil degranulation
Molecular Function
- ferroxidase activity
- iron ion binding
- protein binding
- ferrous iron binding
- ferric iron binding
Cellular Component
- extracellular region
- nucleus
- cytoplasm
- cytosol
- intracellular ferritin complex
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000273550
- Coding exons
- 4
- Length
- 7943
- Individuals with no LoFs
- 124788
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 7
- Defined
- 124795
- p
- 0.0000280
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.865 | 72 | 95.8 | 0.751 | 0.00000518 | 1212 |
| Missense (PolyPhen) | 4 | 11.014 | 0.36318 | 183 | ||
| Synonymous | -0.879 | 49 | 41.8 | 1.17 | 0.00000240 | 324 |
| Loss of Function | 2.05 | 3 | 9.98 | 0.301 | 5.93e-7 | 110 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0 | 0.0 | absent |
| Ashkenazi Jewish | 0.000099 | 0.000099 | rare |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.000055 | 0.000053 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity). {ECO:0000250}.;
Recessive Scores
- pRec
- 0.485
Intolerance Scores
- LoFtool
- 0.169
- RVIS EVS
- 0.1
- RVIS percentile EVS
- 61.28
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.976
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |