FTHL17

ferritin heavy chain like 17, the group of Ferritin subunits

Basic information

Region (hg38): X:31071233-31072041

Links

ENSG00000132446 ∙ NCBI:53940 ∙ OMIM:300308 ∙ HGNC:3987 ∙ Uniprot:Q9BXU8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FTHL17 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FTHL17 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13	1		14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	1	0

Variants in FTHL17

This is a list of pathogenic ClinVar variants found in the FTHL17 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-31071433-A-C		not specified	Uncertain significance (May 01, 2024)
X-31071458-G-C		not specified	Uncertain significance (Sep 04, 2024)
X-31071557-A-G		not specified	Uncertain significance (May 23, 2024)
X-31071593-G-T		not specified	Uncertain significance (Feb 22, 2023)
X-31071615-C-G		not specified	Uncertain significance (Sep 26, 2024)
X-31071653-T-C		not specified	Uncertain significance (Oct 19, 2024)
X-31071659-C-T		not specified	Uncertain significance (Aug 22, 2023)
X-31071725-G-A		not specified	Uncertain significance (Jul 06, 2021)
X-31071790-T-C		not specified	Uncertain significance (Feb 23, 2023)
X-31071828-G-T		not specified	Uncertain significance (Jan 04, 2024)
X-31071877-G-A		not specified	Uncertain significance (May 26, 2024)
X-31071914-C-G		not specified	Likely benign (Aug 09, 2021)
X-31071926-G-A		not specified	Uncertain significance (Sep 14, 2023)
X-31071930-C-A		not specified	Uncertain significance (Apr 04, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FTHL17	protein_coding	protein_coding	ENST00000359202	1	811

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.760	71	91.4	0.776	0.00000866	1202
Missense in Polyphen		16	18.033	0.88726		314
Synonymous	1.04	40	49.3	0.811	0.00000521	366
Loss of Function

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish
East Asian
Finnish
European (Non-Finnish)
Middle Eastern
South Asian
Other

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.106

Intolerance Scores

• loftool: 0.609
• rvis_EVS: 1.24
• rvis_percentile_EVS: 93.29

Haploinsufficiency Scores

• pHI: 0.0551
• hipred: N
• hipred_score: 0.123

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fthl17a

Gene ontology

• Biological process: iron ion transport;intracellular sequestering of iron ion;oxidation-reduction process
• Cellular component: cytoplasm
• Molecular function: ferroxidase activity;iron ion binding;ferrous iron binding;ferric iron binding;identical protein binding