FUS
protein-codingFUS RNA binding protein, the group of Zinc fingers RANBP2-type |RNA binding motif containing|Heterogeneous nuclear ribonucleoproteins
Gene summary
This gene encodes a multifunctional protein component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complex. The hnRNP complex is involved in pre-mRNA splicing and the export of fully processed mRNA to the cytoplasm. This protein belongs to the FET family of RNA-binding proteins which have been implicated in cellular processes that include regulation of gene expression, maintenance of genomic integrity and mRNA/microRNA processing. Alternative splicing results in multiple transcript variants. Defects in this gene result in amyotrophic lateral sclerosis type 6. [provided by RefSeq, Sep 2009]
- ALS6
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~16.8 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0004976
Submitter: Orphanet
Inheritance Pattern: AR
Disease ID:MONDO:0017593
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0011951
Submitter: Genomics England PanelApp
Inheritance Pattern: AD
Disease ID:MONDO:0004976
Submitter: Illumina
The FUS gene is located on chromosome 16 at 16p11.2 and encodes the FUS RNA binding protein which is predominantly located in the nucleus and involved in the regulation of many cellular processes, including RNA metabolism, regulation of translation, and stress response. The FUS gene was first reported in relation to autosomal dominant amyotrophic lateral sclerosis, with or without frontotemporal dementia in 2009 (19251627: Kwaitkowski et al. 2009); 19251628: Vance et al. 2009). At least 18 unique missense, stop gained and frameshift variants have been reported in ClinVar. Evidence supporting this gene-disease relationship includes case-level data, segregation data and experimental data. Variants in this gene have been reported in at least ten probands in six publications (19251628: Vance et al. 2009; 20668259: Yan et al. 2010; 20660363: Waibel et al. 2010; 24439481; Calvo et al. 2014; 25457557: Kim et al. 2015; 26362943; Hubers et al. 2015). Vance et al. (2009) reported segregation of disease with a FUS variant in six affected family members. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. This gene-disease association is supported by studies in patient derived cell lines and at least two transgenic mouse models which recapitulate key features of disease (23867462: Shelkobnikova et al. 2013; 26795035: Lim et al. 2016; 30344044: Lopez Erauskin 2018). In summary, FUS is definitively associated with autosomal dominant amyotrophic lateral sclerosis, with or without frontotemporal dementia. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time.
Inheritance Pattern: AD
Disease ID:MONDO:0011951
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0013888
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0011951
Submitter: ClinGen
FUS was first reported in relation to autosomal dominant amyotrophic lateral sclerosis 6 (ALS) in 2009 (Kwiatkowski TJ, et al., 2009, PMID: 19251627 and Vance C, et al., 2009, PMID: 19251628). ALS is a neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. FUS encodes a nucleoprotein that functions in DNA and RNA metabolism, including DNA repair, and the regulation of transcription, RNA splicing, and export to the cytoplasm. It’s proposed that the FALS-associated FUS mutations alter the liquid-solid phase transition in FUS and thereby dominantly interfere with the ability of wild type FUS in DNA damage repair and RNA splicing, leading to both structural and functional defects in dendritic/axonal growth and synaptic transmission (PMID: 27033831). Evidence supporting this gene-disease relationship includes case-level data and experimental data. More than 50 mutations in FUS have been associated with ALS, the majority of which are dominant, missense changes clustered in and around the C-terminal nuclear localization signal, as well as some nonsense, splicing, and frameshift variants (reviewed in PMID: 27033831). This curation includes 26 variants in this gene that have been reported in 26 probands in 7 publications (PMIDs: 19251627, 19251628, 19741215, 20232451, 26362943, 22057404, and 20668259). Experimentally, this gene-disease relationship is supported the alterations observed in cells expressing FUS variants, showing mislocalization to the cytoplasm and association with stress granules (PMID: 23474818) as well as decreased DNA repair (PMID: 24036913). Further support is provided by several animal models (at least 6 transgenic strains, reviewed in PMID: 27033831) including mouse (PMID: 26842965) and rat models (PMID: 21408206), which recapitulate features of ALS. In summary FUS is definitively associated with autosomal dominant amyotrophic lateral sclerosis 6. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen ALS GCEP on 10/12/2021 (SOPv8). Of note, FUS has also been reported in relation to autosomal dominant hereditary essential tremor 4. This will be curated separately from ALS per criteria outlined by the ClinGen Lumping and Splitting working group; there is a difference in molecular mechanism (gain of toxicity vs loss of function) and phenotype.
Inheritance Pattern: Unknown
Disease ID:MONDO:0013888
Submitter: Labcorp Genetics (formerly Invitae)
Clinical Genomic Database (CGD)
Manifestation: Neurologic
Intervention: General
Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to FUS variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_004960.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 9 | 98 | 2 | 109 | ||
| missense | 13 | 13 | 171 | 24 | 221 | |
| nonsense | 4 | 2 | 2 | 8 | ||
| start loss | 0 | |||||
| frameshift | 12 | 8 | 4 | 24 | ||
| splice donor/acceptor (+/-2bp) | 2 | 3 | 24 | 29 | ||
| Total | 31 | 26 | 210 | 122 | 2 | 391 |
Highest pathogenic variant AF is 0.000040296534
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_004951.1 | 15 | MANE Select | |
| Ensembl | ENSP00000254108.8 | 15 | MANE Select | |
| RefSeq | NP_001164105.1 | 15 | Standard | |
| RefSeq | NP_001164408.1 | 15 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| fus | Danio rerio | Structure: CaP motoneuron Quality: decreased length abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Transcriptional misregulation in cancer - Homo sapiens (human)
- mRNA Processing
- Metabolism of RNA
- mRNA Splicing - Major Pathway
- mRNA Splicing
Biological Process
- mRNA splicing, via spliceosome
- regulation of transcription, DNA-templated
- cellular response to calcium ion
- positive regulation of nucleic acid-templated transcription
Molecular Function
- DNA binding
- transcription coactivator activity
- RNA binding
- protein binding
- estrogen receptor binding
Cellular Component
- nucleus
- nucleoplasm
- polysome
- perikaryon
- dendritic spine head
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000254108
- Coding exons
- 15
- Length
- 11697
- Individuals with no LoFs
- 125728
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 5
- Defined
- 125733
- p
- 0.0000199
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 2.21 | 217 | 330 | 0.658 | 0.0000207 | 3400 |
| Missense (PolyPhen) | 28 | 63.684 | 0.43967 | 648 | ||
| Synonymous | -2.13 | 147 | 118 | 1.25 | 0.00000745 | 1027 |
| Loss of Function | 5.16 | 4 | 38.6 | 0.104 | 0.00000228 | 381 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0.000059 | 0.000058 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.000018 | 0.000018 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0.00017 | 0.00016 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Binds both single-stranded and double-stranded DNA and promotes ATP-independent annealing of complementary single- stranded DNAs and D-loop formation in superhelical double-stranded DNA. May play a role in maintenance of genomic integrity.;
- Disease
- DISEASE: Note=A chromosomal aberration involving FUS is found in a patient with malignant myxoid liposarcoma. Translocation t(12;16)(q13;p11) with DDIT3. {ECO:0000269|PubMed:7503811}.; DISEASE: Note=A chromosomal aberration involving FUS is a cause of acute myeloid leukemia (AML). Translocation t(16;21)(p11;q22) with ERG. {ECO:0000269|PubMed:8187069}.; DISEASE: Angiomatoid fibrous histiocytoma (AFH) [MIM:612160]: A distinct variant of malignant fibrous histiocytoma that typically occurs in children and adolescents and is manifest by nodular subcutaneous growth. Characteristic microscopic features include lobulated sheets of histiocyte-like cells intimately associated with areas of hemorrhage and cystic pseudovascular spaces, as well as a striking cuffing of inflammatory cells, mimicking a lymph node metastasis. {ECO:0000269|PubMed:11063792}. Note=The gene represented in this entry is involved in disease pathogenesis. A chromosomal aberration involving FUS is found in a patient with angiomatoid fibrous histiocytoma. Translocation t(12;16)(q13;p11.2) with ATF1 generates a chimeric FUS/ATF1 protein. {ECO:0000269|PubMed:11063792}.; DISEASE: Amyotrophic lateral sclerosis 6, with or without frontotemporal dementia (ALS6) [MIM:608030]: A neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. {ECO:0000269|PubMed:19251627, ECO:0000269|PubMed:19251628, ECO:0000269|PubMed:19861302, ECO:0000269|PubMed:20124201, ECO:0000269|PubMed:27604643}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Tremor, hereditary essential 4 (ETM4) [MIM:614782]: A common movement disorder mainly characterized by postural tremor of the arms. Head, legs, trunk, voice, jaw, and facial muscles also may be involved. The condition can be aggravated by emotions, hunger, fatigue and temperature extremes, and may cause a functional disability or even incapacitation. Inheritance is autosomal dominant. {ECO:0000269|PubMed:22863194}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.491
Intolerance Scores
- LoFtool
- 0.00503
- RVIS EVS
- -1
- RVIS percentile EVS
- 8.32
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- E
- Indispensability pred.
- E
- Indispensability score
- 0.856
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |