GIMAP8

GTPase, IMAP family member 8, the group of GTPases, IMAP

Basic information

Region (hg38): 7:150450630-150479393

Links

ENSG00000171115 ∙ NCBI:155038 ∙ OMIM:616962 ∙ HGNC:21792 ∙ Uniprot:Q8ND71 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GIMAP8 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GIMAP8 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			45	3		48
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	45	4	0

Variants in GIMAP8

This is a list of pathogenic ClinVar variants found in the GIMAP8 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-150466723-T-C		not specified	Uncertain significance (Nov 20, 2023)
7-150466753-T-C		not specified	Uncertain significance (Apr 22, 2024)
7-150466756-C-T		not specified	Uncertain significance (May 14, 2024)
7-150466762-G-C		not specified	Uncertain significance (Dec 14, 2023)
7-150466844-G-T		not specified	Uncertain significance (Oct 25, 2022)
7-150466850-G-C		not specified	Uncertain significance (Jun 22, 2023)
7-150466916-T-C		not specified	Uncertain significance (Oct 26, 2022)
7-150466964-T-G		not specified	Uncertain significance (Aug 02, 2021)
7-150466972-C-G		not specified	Uncertain significance (Mar 31, 2022)
7-150467041-A-G		not specified	Likely benign (Nov 17, 2022)
7-150467065-G-A		not specified	Uncertain significance (Nov 15, 2023)
7-150467072-C-T		not specified	Uncertain significance (Jul 25, 2023)
7-150467101-C-A			Likely benign (Sep 01, 2022)
7-150467137-T-C		not specified	Uncertain significance (Feb 10, 2022)
7-150467205-C-A		not specified	Uncertain significance (Dec 18, 2023)
7-150467258-G-T		not specified	Uncertain significance (Jan 30, 2024)
7-150467284-A-G		not specified	Uncertain significance (Oct 06, 2022)
7-150467287-G-A		not specified	Uncertain significance (Nov 07, 2022)
7-150467312-A-G		not specified	Likely benign (Jun 28, 2022)
7-150470839-A-G		not specified	Uncertain significance (Jun 29, 2023)
7-150470842-A-G		not specified	Uncertain significance (Jul 19, 2022)
7-150474030-T-C		not specified	Uncertain significance (Feb 26, 2024)
7-150474047-G-A		not specified	Uncertain significance (Dec 19, 2022)
7-150474066-C-T		not specified	Uncertain significance (Dec 28, 2022)
7-150474096-G-A		not specified	Uncertain significance (Oct 25, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GIMAP8	protein_coding	protein_coding	ENST00000307271	4	28763

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000715	0.920	122793	0	1	122794	0.00000407

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.204	356	367	0.970	0.0000210	4395
Missense in Polyphen		107	117.44	0.91114		1529
Synonymous	-1.23	167	148	1.13	0.00000876	1281
Loss of Function	1.61	9	15.9	0.565	7.62e-7	208

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000898	0.00000898
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections. {ECO:0000250}.

Recessive Scores

• pRec: 0.0567

Intolerance Scores

• loftool: 0.847
• rvis_EVS: -0.02
• rvis_percentile_EVS: 52.25

Haploinsufficiency Scores

• pHI: 0.0383
• hipred: N
• hipred_score: 0.123
• ghis: 0.445

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0986

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gimap8
• Phenotype: skeleton phenotype; immune system phenotype; hematopoietic system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); growth/size/body region phenotype

Gene ontology

• Biological process: regulation of T cell apoptotic process
• Cellular component: mitochondrion;endoplasmic reticulum;Golgi apparatus;cytosol
• Molecular function: GTP binding