GLCCI1-DT

GLCCI1 divergent transcript, the group of Divergent transcripts

Basic information

Region (hg38): 7:7949829-7969903

Links

ENSG00000233108 ∙ NCBI:100505921 ∙ ∙ HGNC:40852 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GLCCI1-DT gene.

• Inborn genetic diseases (18 variants)
• Glucocorticoid therapy, response to (1 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GLCCI1-DT gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			18	1		19
Total	0	0	18	1	0

Variants in GLCCI1-DT

This is a list of pathogenic ClinVar variants found in the GLCCI1-DT region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-7968245-G-G		Glucocorticoid therapy, response to	drug response (Dec 20, 2011)
7-7969363-T-G		not specified	Uncertain significance (Nov 17, 2023)
7-7969451-T-G		not specified	Uncertain significance (Oct 20, 2021)
7-7969462-G-C		not specified	Uncertain significance (Aug 12, 2021)
7-7969466-G-C		not specified	Uncertain significance (Aug 12, 2021)
7-7969474-G-A		not specified	Uncertain significance (Mar 14, 2023)
7-7969475-G-C		not specified	Uncertain significance (Aug 12, 2021)
7-7969477-G-C		not specified	Uncertain significance (Aug 12, 2021)
7-7969480-G-A		not specified	Uncertain significance (May 16, 2022)
7-7969501-T-G		not specified	Uncertain significance (Oct 12, 2022)
7-7969503-C-G		not specified	Uncertain significance (Oct 12, 2022)
7-7969504-G-T		not specified	Uncertain significance (Nov 01, 2022)
7-7969517-G-C		not specified	Uncertain significance (Nov 29, 2023)
7-7969649-C-T			Likely benign (Jun 01, 2022)
7-7969655-G-T		not specified	Uncertain significance (Jan 19, 2022)
7-7969663-A-C		not specified	Uncertain significance (Jun 22, 2021)
7-7969664-G-C		not specified	Uncertain significance (Dec 17, 2023)
7-7969669-T-G		not specified	Uncertain significance (Jun 22, 2021)
7-7969672-A-C		not specified	Uncertain significance (Jun 22, 2021)
7-7969673-G-A		not specified	Uncertain significance (Apr 16, 2024)
7-7969681-C-G		not specified	Uncertain significance (Jul 14, 2022)
7-7969700-C-T		not specified	Uncertain significance (Dec 06, 2021)
7-7969705-G-A		not specified	Uncertain significance (Jun 22, 2021)
7-7969721-C-T		not specified	Uncertain significance (Apr 25, 2023)
7-7969793-C-T		not specified	Uncertain significance (Dec 28, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP