GPR119

G protein-coupled receptor 119, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): X:130379448-130385674

Links

ENSG00000147262 ∙ NCBI:139760 ∙ OMIM:300513 ∙ HGNC:19060 ∙ Uniprot:Q8TDV5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR119 gene.

• Inborn genetic diseases (6 variants)
• not provided (3 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR119 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			5	2	1	8
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	5	3	1

Variants in GPR119

This is a list of pathogenic ClinVar variants found in the GPR119 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-130384483-G-C		not specified	Uncertain significance (Jan 08, 2024)
X-130384522-G-A			Benign (Jul 13, 2018)
X-130384633-G-T		not specified	Uncertain significance (Dec 28, 2022)
X-130384678-T-C		not specified	Uncertain significance (Jul 07, 2022)
X-130384742-G-C			Likely benign (Jul 20, 2018)
X-130385024-C-T		not specified	Uncertain significance (Oct 14, 2023)
X-130385078-C-A		not specified	Uncertain significance (Jun 01, 2023)
X-130385183-C-T		not specified	Uncertain significance (Jan 26, 2022)
X-130385236-C-T		not specified	Likely benign (Jun 22, 2023)
X-130385269-C-G		not specified	Uncertain significance (Apr 18, 2023)
X-130385287-A-T		not specified	Uncertain significance (Dec 20, 2023)
X-130385307-C-T			Likely benign (Nov 01, 2022)
X-130385420-T-A		not specified	Uncertain significance (Nov 14, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR119	protein_coding	protein_coding	ENST00000276218	1	1193

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00862	0.813	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.24	94	134	0.699	0.0000107	2165
Missense in Polyphen		28	35.276	0.79375		629
Synonymous	-0.539	63	57.8	1.09	0.00000471	740
Loss of Function	1.06	4	7.03	0.569	6.34e-7	87

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Receptor for the endogenous fatty-acid ethanolamide oleoylethanolamide (OEA) and lysophosphatidylcholine (LPC). Functions as a glucose-dependent insulinotropic receptor. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Seems to act through a G(s) mediated pathway. {ECO:0000269|PubMed:16517404}.
• Pathway: cAMP signaling pathway - Homo sapiens (human);Insulin secretion - Homo sapiens (human) (Consensus)

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.586
• rvis_EVS: 0.26
• rvis_percentile_EVS: 70.26

Haploinsufficiency Scores

• pHI: 0.474
• hipred: N
• hipred_score: 0.279

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr119
• Phenotype: homeostasis/metabolism phenotype; growth/size/body region phenotype

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;insulin secretion
• Cellular component: plasma membrane;integral component of membrane;receptor complex
• Molecular function: G protein-coupled receptor activity;phosphatidylcholine binding