GPR148

G protein-coupled receptor 148, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 2:130729070-130730336

Links

ENSG00000173302 ∙ NCBI:344561 ∙ ∙ HGNC:23623 ∙ Uniprot:Q8TDV2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR148 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR148 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			43	3		46
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	43	3	0

Variants in GPR148

This is a list of pathogenic ClinVar variants found in the GPR148 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-130729164-C-G		not specified	Uncertain significance (Dec 26, 2023)
2-130729189-C-T		not specified	Uncertain significance (Sep 03, 2024)
2-130729215-A-G		not specified	Uncertain significance (Apr 07, 2023)
2-130729221-A-G		not specified	Uncertain significance (Dec 10, 2024)
2-130729237-C-T		not specified	Uncertain significance (Apr 15, 2025)
2-130729272-G-A		not specified	Uncertain significance (Aug 13, 2021)
2-130729285-C-T		not specified	Uncertain significance (May 26, 2023)
2-130729289-C-A		not specified	Uncertain significance (Aug 01, 2024)
2-130729311-C-G		not specified	Uncertain significance (Dec 12, 2024)
2-130729326-C-G		not specified	Uncertain significance (May 26, 2025)
2-130729333-C-T		not specified	Uncertain significance (Mar 01, 2023)
2-130729366-T-C		not specified	Uncertain significance (May 20, 2024)
2-130729378-G-A		not specified	Uncertain significance (Apr 06, 2024)
2-130729387-G-A		not specified	Uncertain significance (Dec 17, 2023)
2-130729392-C-G		not specified	Uncertain significance (Sep 25, 2024)
2-130729393-G-A		not specified	Uncertain significance (Oct 27, 2021)
2-130729427-C-G		not specified	Uncertain significance (Sep 08, 2024)
2-130729456-T-C		not specified	Uncertain significance (Jan 29, 2024)
2-130729464-C-T		not specified	Uncertain significance (Aug 27, 2024)
2-130729473-T-C		not specified	Uncertain significance (Jul 31, 2024)
2-130729481-C-A		not specified	Uncertain significance (May 09, 2022)
2-130729486-G-T		not specified	Uncertain significance (Jul 26, 2024)
2-130729504-G-A		not specified	Uncertain significance (Aug 08, 2022)
2-130729533-G-C		not specified	Uncertain significance (Feb 04, 2025)
2-130729542-G-A		not specified	Uncertain significance (Aug 02, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR148	protein_coding	protein_coding	ENST00000309926	1	1267

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000626	0.292	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.0503	199	197	1.01	0.0000105	2193
Missense in Polyphen		27	29.266	0.92257		416
Synonymous	0.306	83	86.6	0.958	0.00000446	797
Loss of Function	-0.231	6	5.42	1.11	3.17e-7	46

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor.

Recessive Scores

• pRec: 0.149

Intolerance Scores

• loftool: 0.607
• rvis_EVS: 1.02
• rvis_percentile_EVS: 90.98

Haploinsufficiency Scores

• pHI: 0.0749
• hipred: N
• hipred_score: 0.123

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.216

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity