GPR152

G protein-coupled receptor 152, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 11:67451300-67452729

Links

ENSG00000175514 ∙ NCBI:390212 ∙ ∙ HGNC:23622 ∙ Uniprot:Q8TDT2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR152 gene.

• Inborn genetic diseases (19 variants)
• Cone-rod synaptic disorder, congenital nonprogressive (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR152 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16	3	1	20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	3	1

Variants in GPR152

This is a list of pathogenic ClinVar variants found in the GPR152 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-67451331-G-A		not specified	Uncertain significance (Dec 17, 2023)
11-67451395-C-T		not specified	Likely benign (Sep 30, 2021)
11-67451422-A-T		not specified	Likely benign (Dec 27, 2022)
11-67451491-C-T		not specified	Uncertain significance (Sep 29, 2023)
11-67451523-T-G		not specified	Uncertain significance (Oct 04, 2022)
11-67451532-G-T		not specified	Uncertain significance (Nov 08, 2021)
11-67451533-G-C		not specified	Uncertain significance (Nov 08, 2021)
11-67451572-C-T		not specified	Likely benign (Jan 30, 2024)
11-67451760-G-A		not specified	Uncertain significance (Jun 28, 2022)
11-67451793-G-A		not specified	Uncertain significance (May 23, 2023)
11-67451857-G-A		not specified	Uncertain significance (Dec 28, 2023)
11-67452016-G-A		not specified	Uncertain significance (Apr 22, 2022)
11-67452018-G-T		not specified	Uncertain significance (Jan 29, 2024)
11-67452036-G-T		not specified	Uncertain significance (Oct 21, 2021)
11-67452042-T-C		not specified	Likely benign (Feb 13, 2024)
11-67452054-T-A		not specified	Uncertain significance (Dec 14, 2023)
11-67452076-C-T		not specified	Uncertain significance (Mar 07, 2024)
11-67452097-C-T		not specified	Uncertain significance (Jun 07, 2023)
11-67452157-C-T		not specified	Uncertain significance (Jan 26, 2022)
11-67452193-C-T		not specified	Uncertain significance (Aug 09, 2021)
11-67452327-G-A		not specified	Uncertain significance (Apr 20, 2023)
11-67452373-C-T		not specified	Uncertain significance (May 17, 2023)
11-67452391-C-T		not specified	Uncertain significance (Jan 31, 2024)
11-67452459-A-G		not specified	Uncertain significance (May 04, 2023)
11-67452532-G-A		not specified	Uncertain significance (Sep 16, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR152	protein_coding	protein_coding	ENST00000312457	1	1429

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000380	0.640	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.845	253	294	0.861	0.0000191	2945
Missense in Polyphen		110	122.52	0.8978		1361
Synonymous	0.484	136	143	0.949	0.0000101	1091
Loss of Function	0.696	6	8.14	0.737	3.56e-7	69

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor.

Recessive Scores

• pRec: 0.0982

Intolerance Scores

• loftool: 0.740
• rvis_EVS: 0.54
• rvis_percentile_EVS: 81.07

Haploinsufficiency Scores

• pHI: 0.0986
• hipred: N
• hipred_score: 0.208

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.288

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr152
• Phenotype: homeostasis/metabolism phenotype; skeleton phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan)

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity