GPR160

G protein-coupled receptor 160, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 3:170037995-170085392

Links

ENSG00000173890 ∙ NCBI:26996 ∙ ∙ HGNC:23693 ∙ Uniprot:Q9UJ42 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR160 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR160 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			19	2		21
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	19	2	0

Variants in GPR160

This is a list of pathogenic ClinVar variants found in the GPR160 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-170083963-A-C		GPR160-related disorder	Likely benign (Oct 21, 2020)
3-170083998-G-A		not specified	Uncertain significance (Jan 03, 2022)
3-170084036-C-A		GPR160-related disorder	Benign (May 28, 2019)
3-170084093-C-T		not specified	Likely benign (Feb 27, 2023)
3-170084103-G-C		not specified	Uncertain significance (Oct 22, 2024)
3-170084123-T-G		not specified	Uncertain significance (Mar 05, 2024)
3-170084147-T-C		not specified	Uncertain significance (Apr 11, 2023)
3-170084268-A-G		not specified	Uncertain significance (Jul 05, 2024)
3-170084307-T-C		not specified	Uncertain significance (Nov 25, 2024)
3-170084325-T-C		not specified	Uncertain significance (Mar 10, 2025)
3-170084342-T-C		not specified	Uncertain significance (May 04, 2022)
3-170084471-C-A		not specified	Uncertain significance (Oct 16, 2024)
3-170084493-G-T		not specified	Uncertain significance (Oct 24, 2024)
3-170084516-A-C		not specified	Uncertain significance (Jul 26, 2022)
3-170084580-A-T		not specified	Uncertain significance (Jan 02, 2024)
3-170084661-C-G		not specified	Uncertain significance (Jan 27, 2022)
3-170084682-A-C		not specified	Uncertain significance (Oct 12, 2024)
3-170084702-C-T		not specified	Likely benign (Mar 14, 2023)
3-170084776-G-T		not specified	Uncertain significance (Oct 22, 2024)
3-170084792-G-A		not specified	Uncertain significance (Dec 28, 2023)
3-170084817-T-A		not specified	Uncertain significance (Dec 14, 2024)
3-170084828-T-C		not specified	Uncertain significance (Feb 05, 2024)
3-170084914-G-C		not specified	Uncertain significance (Sep 06, 2022)
3-170084969-A-G		not specified	Uncertain significance (Dec 15, 2022)
3-170084978-A-C		not specified	Uncertain significance (Nov 21, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR160	protein_coding	protein_coding	ENST00000355897	1	47475

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000723	0.773	125507	0	164	125671	0.000653

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.211	154	162	0.953	0.00000721	2221
Missense in Polyphen		37	37.683	0.98187		579
Synonymous	0.634	51	57.1	0.893	0.00000252	631
Loss of Function	1.02	6	9.36	0.641	3.89e-7	142

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000879	0.000871
Ashkenazi Jewish	0.00	0.00
East Asian	0.000272	0.000272
Finnish	0.0000930	0.0000924
European (Non-Finnish)	0.000383	0.000378
Middle Eastern	0.000272	0.000272
South Asian	0.00310	0.00281
Other	0.000504	0.000490

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor.

Recessive Scores

• pRec: 0.0827

Intolerance Scores

• loftool: 0.574
• rvis_EVS: 0.37
• rvis_percentile_EVS: 75.12

Haploinsufficiency Scores

• pHI: 0.324
• hipred: N
• hipred_score: 0.153
• ghis: 0.432

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.366

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr160

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane;receptor complex
• Molecular function: G protein-coupled receptor activity