GPR173

G protein-coupled receptor 173, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): X:53048789-53080615

Links

ENSG00000184194 ∙ NCBI:54328 ∙ OMIM:300253 ∙ HGNC:18186 ∙ Uniprot:Q9NS66 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR173 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR173 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			14			14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	0	0

Variants in GPR173

This is a list of pathogenic ClinVar variants found in the GPR173 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-53076637-G-A		not specified	Uncertain significance (Jun 10, 2024)
X-53076640-G-A		not specified	Uncertain significance (Feb 17, 2022)
X-53076766-A-C		not specified	Uncertain significance (Dec 13, 2023)
X-53076773-G-A		not specified	Uncertain significance (Jan 23, 2023)
X-53076841-G-A		not specified	Uncertain significance (May 31, 2024)
X-53076865-T-G		not specified	Uncertain significance (Aug 27, 2024)
X-53076871-C-T		not specified	Uncertain significance (Feb 12, 2025)
X-53076872-G-A		not specified	Uncertain significance (Nov 08, 2024)
X-53076874-C-T		not specified	Uncertain significance (Feb 10, 2023)
X-53077022-G-A		not specified	Uncertain significance (Dec 21, 2023)
X-53077105-G-A		not specified	Uncertain significance (Jul 20, 2021)
X-53077279-G-A		not specified	Conflicting classifications of pathogenicity (Sep 08, 2024)
X-53077373-G-A		not specified	Uncertain significance (Jan 30, 2024)
X-53077427-G-A		not specified	Uncertain significance (Apr 12, 2024)
X-53077547-G-A		not specified	Uncertain significance (Dec 17, 2024)
X-53077564-T-C		not specified	Uncertain significance (Feb 16, 2023)
X-53077645-C-G		not specified	Uncertain significance (Jan 26, 2025)
X-53077678-A-G		not specified	Uncertain significance (Feb 23, 2025)
X-53077693-T-C		not specified	Uncertain significance (Feb 09, 2025)
X-53077706-G-A		not specified	Uncertain significance (Aug 27, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR173	protein_coding	protein_coding	ENST00000332582	1	31525

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.874	0.124	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.26	95	181	0.526	0.0000160	2424
Missense in Polyphen		10	37.733	0.26502		506
Synonymous	0.678	69	76.5	0.901	0.00000726	797
Loss of Function	2.41	0	6.77	0.00	5.02e-7	101

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor.
• Pathway: GPCRs, Class A Rhodopsin-like (Consensus)

Recessive Scores

• pRec: 0.118

Intolerance Scores

• rvis_EVS: -0.49
• rvis_percentile_EVS: 22.09

Haploinsufficiency Scores

• pHI: 0.184
• hipred: Y
• hipred_score: 0.563
• ghis: 0.557

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.128

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr173

Gene ontology

• Biological process: signal transduction;G protein-coupled receptor signaling pathway;cellular response to gonadotropin-releasing hormone;negative regulation of neuron migration
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;gonadotropin-releasing hormone receptor activity