GPR180

G protein-coupled receptor 180, the group of 7TM uncharacterized proteins

Basic information

Region (hg38): 13:94601857-94634661

Links

ENSG00000152749 ∙ NCBI:160897 ∙ OMIM:607787 ∙ HGNC:28899 ∙ Uniprot:Q86V85 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR180 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR180 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			19	2		21
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	19	2	0

Variants in GPR180

This is a list of pathogenic ClinVar variants found in the GPR180 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-94601935-G-C		not specified	Uncertain significance (Oct 03, 2024)
13-94601935-G-T		not specified	Uncertain significance (Aug 08, 2022)
13-94602081-G-C		GPR180-related disorder	Likely benign (Jul 12, 2019)
13-94605402-C-T		not specified	Uncertain significance (Oct 28, 2023)
13-94605499-G-A		not specified	Uncertain significance (Jul 10, 2024)
13-94605531-T-C		not specified	Uncertain significance (Feb 20, 2025)
13-94612206-C-T		GPR180-related disorder	Likely benign (Aug 26, 2019)
13-94612213-A-C		not specified	Uncertain significance (May 17, 2023)
13-94612265-C-G		not specified	Uncertain significance (Dec 03, 2024)
13-94612316-T-C		not specified	Uncertain significance (Oct 26, 2021)
13-94612327-A-G		not specified	Uncertain significance (Dec 23, 2024)
13-94612344-A-G		GPR180-related disorder	Benign (Oct 18, 2019)
13-94612350-C-T		GPR180-related disorder	Benign (Oct 18, 2019)
13-94612360-C-A		not specified	Uncertain significance (Apr 27, 2024)
13-94619218-T-C		GPR180-related disorder	Likely benign (Mar 06, 2019)
13-94619242-G-A		not specified	Uncertain significance (Oct 03, 2024)
13-94619503-G-A		not specified	Uncertain significance (May 07, 2024)
13-94621109-A-T		not specified	Uncertain significance (Nov 13, 2024)
13-94621154-G-C		GPR180-related disorder	Benign (Mar 25, 2019)
13-94621193-G-A		GPR180-related disorder	Benign (Oct 21, 2019)
13-94621229-G-T		not specified	Likely benign (Dec 06, 2022)
13-94623133-T-C		not specified	Uncertain significance (May 09, 2023)
13-94623140-A-G		GPR180-related disorder	Benign (May 06, 2019)
13-94623182-G-A		not specified	Uncertain significance (Oct 12, 2022)
13-94623263-G-A		GPR180-related disorder	Benign (Sep 05, 2019)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR180	protein_coding	protein_coding	ENST00000376958	9	32743

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
4.09e-9	0.572	125686	0	49	125735	0.000195

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.763	188	220	0.855	0.0000102	2876
Missense in Polyphen		59	66.369	0.88897		872
Synonymous	0.349	79	83.0	0.951	0.00000415	823
Loss of Function	1.18	16	21.9	0.729	9.32e-7	273

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000330	0.000330
Ashkenazi Jewish	0.000299	0.000298
East Asian	0.000490	0.000489
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000168	0.000167
Middle Eastern	0.000490	0.000489
South Asian	0.000198	0.000196
Other	0.000507	0.000489

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.191

Intolerance Scores

• loftool: 0.865
• rvis_EVS: -0.01
• rvis_percentile_EVS: 53.51

Haploinsufficiency Scores

• pHI: 0.167
• hipred: N
• hipred_score: 0.350
• ghis: 0.581

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.409

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr180
• Phenotype: cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); homeostasis/metabolism phenotype

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;response to pheromone
• Cellular component: integral component of membrane