GPR27

G protein-coupled receptor 27, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 3:71753855-71756496

Links

ENSG00000170837 ∙ NCBI:2850 ∙ OMIM:605187 ∙ HGNC:4482 ∙ Uniprot:Q9NS67 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR27 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR27 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20			20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	0	0

Variants in GPR27

This is a list of pathogenic ClinVar variants found in the GPR27 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-71754067-G-T		not specified	Uncertain significance (Sep 09, 2021)
3-71754069-C-T		not specified	Uncertain significance (Apr 26, 2024)
3-71754185-G-A		not specified	Uncertain significance (Jun 29, 2022)
3-71754251-G-A		not specified	Uncertain significance (Aug 21, 2023)
3-71754281-G-A		not specified	Uncertain significance (Mar 18, 2024)
3-71754299-G-T		not specified	Uncertain significance (Nov 21, 2022)
3-71754317-C-G		not specified	Uncertain significance (Jul 25, 2023)
3-71754544-C-G		not specified	Uncertain significance (Apr 07, 2023)
3-71754579-C-A		not specified	Uncertain significance (Apr 07, 2023)
3-71754705-T-C		not specified	Uncertain significance (Nov 09, 2021)
3-71754740-G-A		not specified	Uncertain significance (Mar 06, 2023)
3-71754767-G-A		not specified	Uncertain significance (Jun 26, 2023)
3-71754791-C-G		not specified	Uncertain significance (Oct 26, 2021)
3-71754813-T-G		not specified	Uncertain significance (Mar 21, 2023)
3-71754824-C-G		not specified	Uncertain significance (Dec 15, 2022)
3-71754923-C-G		not specified	Uncertain significance (Jan 23, 2024)
3-71754950-G-A		not specified	Uncertain significance (Feb 02, 2022)
3-71754953-G-C		not specified	Uncertain significance (Oct 12, 2022)
3-71755046-A-C		not specified	Uncertain significance (May 21, 2024)
3-71755050-A-C		not specified	Uncertain significance (Jan 18, 2023)
3-71755117-C-G		not specified	Uncertain significance (Jun 21, 2023)
3-71755140-C-T		not specified	Uncertain significance (Feb 13, 2024)
3-71755145-C-T		not specified	Uncertain significance (Aug 02, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR27	protein_coding	protein_coding	ENST00000304411	1	2447

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.347	0.602	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.60	102	159	0.642	0.00000869	2308
Missense in Polyphen		22	57.893	0.38001		924
Synonymous	-1.65	101	82.0	1.23	0.00000476	879
Loss of Function	1.53	1	4.49	0.223	1.94e-7	62

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor. Possible candidate for amine-like G- protein coupled receptor.
• Pathway: GPCRs, Class A Rhodopsin-like;Signaling by GPCR;Signal Transduction;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Haploinsufficiency Scores

• pHI: 0.0743
• hipred: N
• hipred_score: 0.490
• ghis: 0.501

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.191

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr27

Gene ontology

• Biological process: signal transduction;G protein-coupled receptor signaling pathway;positive regulation of insulin secretion involved in cellular response to glucose stimulus;positive regulation of phospholipase C-activating G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity