GPR63

G protein-coupled receptor 63, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 6:96794125-96837477

Links

ENSG00000112218 ∙ NCBI:81491 ∙ OMIM:606915 ∙ HGNC:13302 ∙ Uniprot:Q9BZJ6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR63 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR63 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			24			24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	0	0

Variants in GPR63

This is a list of pathogenic ClinVar variants found in the GPR63 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-96798486-G-A		not specified	Uncertain significance (Feb 27, 2023)
6-96798497-C-T		not specified	Uncertain significance (Jan 09, 2025)
6-96798503-T-C		not specified	Uncertain significance (Oct 14, 2021)
6-96798524-C-T		not specified	Uncertain significance (Feb 09, 2022)
6-96798551-G-A		not specified	Uncertain significance (Sep 26, 2023)
6-96798552-G-A		not specified	Uncertain significance (Dec 21, 2024)
6-96798737-G-C		not specified	Uncertain significance (Jun 28, 2024)
6-96798759-C-A		not specified	Uncertain significance (Mar 13, 2023)
6-96798828-T-C		not specified	Uncertain significance (Aug 17, 2021)
6-96798855-G-A		not specified	Uncertain significance (May 20, 2024)
6-96798894-G-A		not specified	Uncertain significance (Jul 02, 2024)
6-96798902-T-C		not specified	Uncertain significance (Dec 25, 2024)
6-96798944-A-G		not specified	Uncertain significance (May 22, 2023)
6-96798975-T-C		not specified	Uncertain significance (Jan 17, 2024)
6-96799032-T-G		not specified	Uncertain significance (Feb 28, 2024)
6-96799040-A-G		not specified	Uncertain significance (Jan 14, 2025)
6-96799127-G-A		not specified	Uncertain significance (May 08, 2024)
6-96799205-C-T		not specified	Uncertain significance (Jun 10, 2024)
6-96799253-A-C		not specified	Uncertain significance (Oct 29, 2024)
6-96799266-C-A		not specified	Uncertain significance (Dec 31, 2024)
6-96799377-G-A		not specified	Uncertain significance (Dec 20, 2023)
6-96799386-T-C		not specified	Uncertain significance (Feb 15, 2025)
6-96799455-A-T		not specified	Uncertain significance (May 06, 2024)
6-96799523-G-C		not specified	Uncertain significance (Jan 30, 2024)
6-96799548-T-A		not specified	Uncertain significance (Sep 29, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR63	protein_coding	protein_coding	ENST00000229955	1	43352

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.197	0.793	125727	0	19	125746	0.0000756

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.513	206	228	0.904	0.0000119	2769
Missense in Polyphen		64	80.985	0.79027		997
Synonymous	0.444	82	87.3	0.940	0.00000473	864
Loss of Function	2.25	3	11.1	0.271	7.38e-7	113

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.000272	0.000272
Finnish	0.00	0.00
European (Non-Finnish)	0.0000881	0.0000879
Middle Eastern	0.000272	0.000272
South Asian	0.0000327	0.0000327
Other	0.000326	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor. May play a role in brain function.
• Pathway: GPCRs, Class A Rhodopsin-like (Consensus)

Recessive Scores

• pRec: 0.110

Intolerance Scores

• loftool: 0.400
• rvis_EVS: -0.09
• rvis_percentile_EVS: 46.74

Haploinsufficiency Scores

• pHI: 0.456
• hipred: N
• hipred_score: 0.495
• ghis: 0.513

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.245

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr63

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;biological_process
• Cellular component: nucleus;cytosol;plasma membrane;integral component of membrane;receptor complex
• Molecular function: molecular_function;G protein-coupled receptor activity