GPR85

G protein-coupled receptor 85, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 7:113078330-113087778

Links

ENSG00000164604 ∙ NCBI:54329 ∙ OMIM:605188 ∙ HGNC:4536 ∙ Uniprot:P60893 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GPR85 gene.

• Inborn genetic diseases (16 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GPR85 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			16			16
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	0	1

Variants in GPR85

This is a list of pathogenic ClinVar variants found in the GPR85 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-113083733-G-A		not specified	Uncertain significance (Dec 03, 2021)
7-113083767-C-T		not specified	Uncertain significance (Apr 19, 2023)
7-113083815-C-T		not specified	Uncertain significance (Mar 29, 2022)
7-113083923-C-T		not specified	Uncertain significance (Aug 11, 2022)
7-113084092-G-A			Benign (Apr 16, 2018)
7-113084130-T-A		not specified	Uncertain significance (Jun 18, 2021)
7-113084192-C-T		not specified	Uncertain significance (Jan 05, 2022)
7-113084225-A-G		not specified	Uncertain significance (Mar 02, 2023)
7-113084319-A-C		not specified	Uncertain significance (Jan 20, 2023)
7-113084342-C-T		not specified	Uncertain significance (Sep 16, 2021)
7-113084352-C-T		not specified	Uncertain significance (Nov 09, 2021)
7-113084361-A-T		not specified	Uncertain significance (Jul 19, 2022)
7-113084379-T-C		not specified	Uncertain significance (Nov 15, 2021)
7-113084516-C-A		not specified	Uncertain significance (Jan 22, 2024)
7-113084531-C-G		not specified	Uncertain significance (Jul 12, 2023)
7-113084559-G-C		not specified	Uncertain significance (Feb 03, 2022)
7-113084669-A-G		not specified	Uncertain significance (May 27, 2022)
7-113084675-G-A		not specified	Uncertain significance (Jan 22, 2024)
7-113084691-T-C		not specified	Uncertain significance (Feb 16, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
GPR85	protein_coding	protein_coding	ENST00000297146	1	9448

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.773	0.226	125743	0	2	125745	0.00000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.05	117	198	0.591	0.00000988	2411
Missense in Polyphen		17	40.024	0.42475		529
Synonymous	0.0897	76	77.0	0.987	0.00000411	771
Loss of Function	2.51	1	9.25	0.108	4.57e-7	122

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000616	0.0000615
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000879	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor.
• Pathway: GPCRs, Class A Rhodopsin-like (Consensus)

Recessive Scores

• pRec: 0.447

Intolerance Scores

• loftool: 0.144
• rvis_EVS: -0.21
• rvis_percentile_EVS: 38.28

Haploinsufficiency Scores

• pHI: 0.264
• hipred: Y
• hipred_score: 0.566
• ghis: 0.633

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.349

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Gpr85
• Phenotype: nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); growth/size/body region phenotype

Gene ontology

• Biological process: signal transduction;G protein-coupled receptor signaling pathway
• Cellular component: endoplasmic reticulum;plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;protein binding