H4C7

H4 clustered histone 7, the group of H4 histones

Basic information

Region (hg38): 6:26246611-26246996

Previous symbols: [ "H4FL", "HIST1H4G" ]

Links

ENSG00000275663 ∙ NCBI:8369 ∙ OMIM:602832 ∙ HGNC:4792 ∙ Uniprot:Q99525 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the H4C7 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the H4C7 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			12			12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	12	0	0

Variants in H4C7

This is a list of pathogenic ClinVar variants found in the H4C7 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-26246740-T-G		not specified	Uncertain significance (Mar 14, 2024)
6-26246770-C-A		not specified	Uncertain significance (Feb 05, 2024)
6-26246815-T-C		not specified	Uncertain significance (Jun 10, 2024)
6-26246827-T-C		not specified	Uncertain significance (Mar 07, 2025)
6-26246830-G-T		not specified	Uncertain significance (Jan 30, 2024)
6-26246833-C-T		not specified	Uncertain significance (Jun 26, 2024)
6-26246872-G-A		not specified	Uncertain significance (Nov 10, 2022)
6-26246892-C-T		not specified	Uncertain significance (Dec 17, 2023)
6-26246907-C-G		not specified	Uncertain significance (Sep 17, 2021)
6-26246911-G-T		not specified	Uncertain significance (Dec 11, 2023)
6-26246916-T-C		not specified	Uncertain significance (Feb 13, 2024)
6-26246917-T-G		not specified	Uncertain significance (May 16, 2023)
6-26246922-T-A		not specified	Uncertain significance (Nov 12, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity). {ECO:0000250}.
• Pathway: Systemic lupus erythematosus - Homo sapiens (human);Viral carcinogenesis - Homo sapiens (human);Alcoholism - Homo sapiens (human);Histone Modifications (Consensus)

Intolerance Scores

• loftool: 0.557
• rvis_EVS: 0.15
• rvis_percentile_EVS: 64.11

Haploinsufficiency Scores

• pHI: 0.225
• hipred: N
• hipred_score: 0.227

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.177

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: nucleosome assembly;biological_process
• Cellular component: nucleosome;nucleus
• Molecular function: molecular_function;DNA binding;protein binding;protein heterodimerization activity