HCG15

HLA complex group 15, the group of Long non-coding RNAs with non-systematic symbols

Basic information

Region (hg38): 6:28984724-29007931

Previous symbols: [ "HCG16" ]

Links

ENSG00000227214 ∙ ∙ ∙ HGNC:18361 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the HCG15 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the HCG15 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in HCG15

This is a list of pathogenic ClinVar variants found in the HCG15 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-28995024-C-T		not specified	Uncertain significance (May 16, 2023)
6-28995083-T-C		not specified	Uncertain significance (Jul 27, 2024)
6-28995102-G-A		not specified	Uncertain significance (Aug 10, 2024)
6-28995155-C-A		not specified	Uncertain significance (Dec 13, 2021)
6-28995206-A-G		not specified	Uncertain significance (Jul 02, 2024)
6-28995209-A-T		not specified	Uncertain significance (Dec 15, 2022)
6-28995301-A-C		not specified	Uncertain significance (May 31, 2023)
6-28995306-G-T		not specified	Uncertain significance (Dec 09, 2024)
6-28995320-C-G		not specified	Uncertain significance (Apr 26, 2023)
6-28995365-C-T		not specified	Likely benign (Feb 13, 2023)
6-28995426-G-A		not specified	Uncertain significance (Nov 13, 2024)
6-28995438-T-G		not specified	Uncertain significance (Oct 14, 2021)
6-28995519-C-T		not specified	Uncertain significance (May 17, 2023)
6-28995674-T-C		not specified	Uncertain significance (Feb 16, 2023)
6-28995677-T-C		not specified	Uncertain significance (Feb 13, 2023)
6-28995687-G-A		not specified	Uncertain significance (Oct 30, 2024)
6-28995709-G-C		not specified	Uncertain significance (Dec 06, 2022)
6-28995786-T-C		not specified	Uncertain significance (Feb 22, 2023)
6-28995866-C-T		not specified	Uncertain significance (Jan 04, 2022)
6-28995920-C-T		not specified	Uncertain significance (Aug 21, 2023)
6-28995939-C-T		not specified	Uncertain significance (Dec 21, 2023)
6-28995953-T-C		not specified	Uncertain significance (Jan 05, 2022)
6-28995999-C-T		not specified	Uncertain significance (Oct 03, 2023)
6-28996013-G-C		not specified	Uncertain significance (Jun 24, 2022)
6-28996058-C-T		not specified	Uncertain significance (May 17, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP