HLCS-AS1

HLCS antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 21:36966461-36975164

Links

ENSG00000224790 ∙ ∙ ∙ HGNC:55850 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the HLCS-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the HLCS-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding				1		1
Total	0	0	0	1	0

Variants in HLCS-AS1

This is a list of pathogenic ClinVar variants found in the HLCS-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
21-36966474-G-T			Likely benign (Dec 01, 2024)
21-36966509-G-C		Holocarboxylase synthetase deficiency	Conflicting classifications of pathogenicity (Sep 01, 2023)
21-36966544-G-A			Uncertain significance (-)
21-36966612-G-A		HLCS-related disorder	Likely benign (May 16, 2019)
21-36966669-T-C			Benign (Jun 29, 2018)
21-36966723-G-A			Benign (Feb 13, 2020)
21-36966727-C-T			Benign (Jan 27, 2020)
21-36966728-C-G			Likely benign (Oct 27, 2020)
21-36966830-T-G			Benign (Aug 31, 2020)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP