HRG-AS1

HRG and FETUB antisense RNA 1, the group of Antisense RNAs

Basic information

Links

ENSG00000197099

∙ NCBI:105374258 ∙ ∙ HGNC:55915 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the HRG-AS1 gene.

not provided (99 variants)
Inborn genetic diseases (90 variants)
Hereditary thrombophilia due to congenital histidine-rich (poly-L) glycoprotein deficiency (10 variants)
High molecular weight kininogen deficiency (9 variants)
Alopecia-intellectual disability syndrome 1 (6 variants)
Polycystic kidney disease 6 with or without polycystic liver disease (4 variants)
not specified (3 variants)
Angioedema, hereditary, 6 (3 variants)
Leanness, susceptibility to (3 variants)
Thrombus (2 variants)
Calcium oxalate nephrolithiasis (2 variants)
Hereditary angioedema with normal C1Inh (2 variants)
Familial early-onset deep venous thrombosis (1 variants)
Enlarged kidney;Multiple renal cysts;Anhydramnios (1 variants)
Kininogen deficiency, total (1 variants)
DNAJB11-related condition (1 variants)
Abnormal bleeding;Thrombocytopenia (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the HRG-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region ? Intron variants in splice region, excluding donor/acceptor (+/-2bp)						0
non coding ? UTR, intron and other, non coding variants	13 clinvar	2 clinvar	109 clinvar	50 clinvar	47 clinvar	221
Total	13	2	109	50	47

Highest pathogenic variant AF is 0.0000789

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP