IFITM10

interferon induced transmembrane protein 10, the group of Interferon induced transmembrane proteins

Basic information

Region (hg38): 11:1732405-1750595

Links

ENSG00000244242 ∙ NCBI:402778 ∙ OMIM:618293 ∙ HGNC:40022 ∙ Uniprot:A6NMD0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the IFITM10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the IFITM10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			20			20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	1	0

Variants in IFITM10

This is a list of pathogenic ClinVar variants found in the IFITM10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-1735288-C-T		not specified	Uncertain significance (Aug 09, 2021)
11-1735318-C-T		not specified	Uncertain significance (Dec 16, 2022)
11-1735332-G-C		not specified	Uncertain significance (Jan 03, 2024)
11-1735351-T-C		not specified	Uncertain significance (Feb 23, 2023)
11-1735402-G-C		not specified	Uncertain significance (Sep 12, 2023)
11-1735425-C-T		not specified	Uncertain significance (Apr 20, 2024)
11-1747678-A-T		not specified	Uncertain significance (May 13, 2024)
11-1747789-T-A		not specified	Uncertain significance (Apr 26, 2024)
11-1747804-T-C		not specified	Uncertain significance (May 20, 2024)
11-1747806-G-A		not specified	Uncertain significance (Apr 08, 2022)
11-1747809-T-G		not specified	Uncertain significance (Feb 28, 2023)
11-1747811-C-A		not specified	Uncertain significance (Dec 27, 2022)
11-1747823-G-C		not specified	Uncertain significance (Jun 22, 2023)
11-1747839-G-A		not specified	Uncertain significance (Mar 07, 2024)
11-1747866-G-A		not specified	Uncertain significance (Jul 20, 2021)
11-1747888-T-C		not specified	Uncertain significance (Sep 26, 2023)
11-1747892-G-C		not specified	Uncertain significance (Oct 14, 2023)
11-1747951-C-T		not specified	Uncertain significance (Mar 07, 2024)
11-1747975-C-T		not specified	Uncertain significance (Jan 30, 2024)
11-1747997-C-T			Likely benign (Sep 01, 2022)
11-1748061-C-T		not specified	Uncertain significance (Jul 19, 2022)
11-1748064-T-C		not specified	Uncertain significance (Dec 21, 2023)
11-1748086-C-T		not specified	Uncertain significance (Nov 06, 2023)
11-1748107-C-T		not specified	Uncertain significance (Dec 14, 2022)
11-1750400-G-A		not specified	Uncertain significance (May 20, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
IFITM10	protein_coding	protein_coding	ENST00000340134	3	18182

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.157	0.782	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.899	86	113	0.762	0.00000748	1437
Missense in Polyphen		34	39.013	0.87151		456
Synonymous	1.49	39	52.8	0.739	0.00000373	477
Loss of Function	1.53	2	6.08	0.329	3.45e-7	78

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Haploinsufficiency Scores

• ghis: 0.434

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ifitm10

Gene ontology

• Cellular component: plasma membrane;integral component of membrane