IGSF22-AS1

IGSF22 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 11:18706474-18740568

Links

ENSG00000254966 ∙ ∙ ∙ HGNC:55511 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the IGSF22-AS1 gene.

• Inborn genetic diseases (65 variants)
• not provided (11 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the IGSF22-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			66	2	2	70
Total	0	0	66	2	2

Variants in IGSF22-AS1

This is a list of pathogenic ClinVar variants found in the IGSF22-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-18706968-C-T		not specified	Uncertain significance (Jan 27, 2022)
11-18707000-T-C		not specified	Uncertain significance (Feb 28, 2023)
11-18707012-G-C			Uncertain significance (Jul 18, 2021)
11-18707043-TGAA-T			Likely benign (Sep 01, 2022)
11-18707081-C-T		not specified	Uncertain significance (Feb 27, 2024)
11-18707090-C-T		not specified	Uncertain significance (Sep 21, 2023)
11-18707166-T-C		not specified	Uncertain significance (Apr 08, 2024)
11-18707190-G-T		not specified	Uncertain significance (Dec 08, 2023)
11-18707198-G-C		not specified	Uncertain significance (Apr 25, 2022)
11-18707809-A-G		not specified	Uncertain significance (Jun 22, 2021)
11-18707830-C-A		not specified	Uncertain significance (May 20, 2024)
11-18707854-A-C		not specified	Uncertain significance (Jan 31, 2023)
11-18707885-G-A		not specified	Uncertain significance (Jan 24, 2023)
11-18707929-G-T		not specified	Uncertain significance (Dec 28, 2023)
11-18707941-C-T			Benign (Jul 01, 2022)
11-18707946-C-G		not specified	Uncertain significance (Feb 28, 2023)
11-18708244-C-T		not specified	Uncertain significance (Sep 14, 2022)
11-18708245-G-A		not specified	Uncertain significance (May 26, 2024)
11-18708253-A-G		not specified	Uncertain significance (Jun 29, 2023)
11-18708289-G-T		not specified	Uncertain significance (Dec 21, 2022)
11-18709405-G-A		not specified	Uncertain significance (Jun 28, 2022)
11-18709435-C-G		not specified	Uncertain significance (Mar 07, 2023)
11-18709437-A-T		not specified	Uncertain significance (Jun 16, 2023)
11-18709494-C-A		not specified	Uncertain significance (Sep 20, 2023)
11-18709504-T-C		not specified	Uncertain significance (Feb 11, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP