INSL4

insulin like 4

Basic information

Region (hg38): 9:5231419-5235304

Links

ENSG00000120211 ∙ NCBI:3641 ∙ OMIM:600910 ∙ HGNC:6087 ∙ Uniprot:Q14641 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the INSL4 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the INSL4 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			13	3	1	17
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	3	2

Variants in INSL4

This is a list of pathogenic ClinVar variants found in the INSL4 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-5231532-C-A		not specified	Uncertain significance (Jun 29, 2022)
9-5231534-T-C		not specified	Uncertain significance (Jan 26, 2025)
9-5231552-C-G		not specified	Uncertain significance (Jan 18, 2025)
9-5231555-C-T		not specified	Uncertain significance (Jan 09, 2025)
9-5231591-G-A		not specified	Uncertain significance (May 21, 2024)
9-5231603-A-G		not specified	Uncertain significance (Oct 17, 2023)
9-5231618-G-C		not specified	Uncertain significance (May 24, 2023)
9-5231628-T-G			Likely benign (Apr 30, 2018)
9-5231659-C-T		not specified	Uncertain significance (Aug 20, 2024)
9-5231667-G-C		not specified	Uncertain significance (Oct 22, 2024)
9-5231674-A-G		not specified	Uncertain significance (Nov 13, 2024)
9-5231693-G-T		not specified	Uncertain significance (Aug 28, 2024)
9-5231710-C-T		not specified	Uncertain significance (Aug 02, 2022)
9-5233658-G-A		not specified	Likely benign (Oct 12, 2024)
9-5233664-A-G			Benign (May 08, 2018)
9-5233712-C-G		not specified	Uncertain significance (Sep 13, 2023)
9-5233780-T-C		not specified	Uncertain significance (Feb 22, 2025)
9-5233788-C-T		not specified	Uncertain significance (Nov 24, 2024)
9-5233807-G-A		not specified	Likely benign (May 31, 2022)
9-5233813-G-T		not specified	Uncertain significance (Oct 25, 2023)
9-5233855-C-A			Benign (May 08, 2018)
9-5233869-T-G		not specified	Uncertain significance (Nov 12, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
INSL4	protein_coding	protein_coding	ENST00000239316	2	3886

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000114	0.223	125388	1	16	125405	0.0000678

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.43	112	76.7	1.46	0.00000413	870
Missense in Polyphen		23	12.86	1.7885		159
Synonymous	-0.213	32	30.5	1.05	0.00000148	295
Loss of Function	-0.856	5	3.32	1.51	2.26e-7	33

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000291	0.0000291
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000355	0.0000265
Middle Eastern	0.00	0.00
South Asian	0.000425	0.000425
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May play an important role in trophoblast development and in the regulation of bone formation.

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.551
• rvis_EVS: 0.71
• rvis_percentile_EVS: 85.53

Haploinsufficiency Scores

• pHI: 0.157
• hipred: N
• hipred_score: 0.123

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0962

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: signal transduction;cell-cell signaling;multicellular organism development;female pregnancy;cell population proliferation;regulation of signaling receptor activity
• Cellular component: extracellular space
• Molecular function: signaling receptor binding;insulin-like growth factor receptor binding;hormone activity