INSRR
Basic information
Region (hg38): 1:156840063-156859117
Links
Phenotypes
GenCC
Source:
- schizophrenia (No Known Disease Relationship), mode of inheritance: Unknown
ClinVar
This is a list of variants' phenotypes submitted to
- not_specified (158 variants)
- not_provided (45 variants)
- Hereditary_insensitivity_to_pain_with_anhidrosis (7 variants)
- Familial_medullary_thyroid_carcinoma (3 variants)
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the INSRR gene is commonly pathogenic or not. These statistics are base on transcript: NM_000014215.3. Only rare variants are included in the table.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUSVUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 2 | 24 | 3 | 29 | ||
| missense | 159 | 13 | 172 | |||
| nonsense | 1 | 1 | ||||
| start loss | 0 | |||||
| frameshift | 1 | 1 | ||||
| splice donor/acceptor (+/-2bp) | 0 | |||||
| Total | 0 | 0 | 163 | 37 | 3 |
GnomAD
Source:
| Gene | Type | Bio Type | Transcript | Coding Exons | Length |
|---|---|---|---|---|---|
| INSRR | protein_coding | protein_coding | ENST00000368195 | 22 | 18956 |
| pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
|---|---|---|---|---|---|---|
| 5.40e-24 | 0.226 | 125559 | 0 | 189 | 125748 | 0.000752 |
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
|---|---|---|---|---|---|---|
| Missense | 0.801 | 740 | 804 | 0.920 | 0.0000491 | 8355 |
| Missense in Polyphen | 321 | 342.39 | 0.93752 | 3607 | ||
| Synonymous | 0.0186 | 333 | 333 | 0.999 | 0.0000204 | 2725 |
| Loss of Function | 1.87 | 45 | 60.7 | 0.741 | 0.00000312 | 629 |
LoF frequencies by population
| Ethnicity | Sum of pLOFs | p |
|---|---|---|
| African & African-American | 0.00117 | 0.00115 |
| Ashkenazi Jewish | 0.000173 | 0.0000992 |
| East Asian | 0.00109 | 0.00109 |
| Finnish | 0.00148 | 0.00148 |
| European (Non-Finnish) | 0.000763 | 0.000747 |
| Middle Eastern | 0.00109 | 0.00109 |
| South Asian | 0.000533 | 0.000523 |
| Other | 0.00115 | 0.00114 |
dbNSFP
Source:
- Function
- FUNCTION: Receptor with tyrosine-protein kinase activity. Functions as a pH sensing receptor which is activated by increased extracellular pH. Activates an intracellular signaling pathway that involves IRS1 and AKT1/PKB. {ECO:0000269|PubMed:21641549}.;
- Pathway
- Regulation of actin cytoskeleton - Homo sapiens (human);Prostate cancer - Homo sapiens (human);Pathways Affected in Adenoid Cystic Carcinoma
(Consensus)
Recessive Scores
- pRec
- 0.196
Intolerance Scores
- loftool
- 0.239
- rvis_EVS
- -2.25
- rvis_percentile_EVS
- 1.28
Haploinsufficiency Scores
- pHI
- 0.623
- hipred
- Y
- hipred_score
- 0.546
- ghis
- 0.455
Essentials
- essential_gene_CRISPR
- N
- essential_gene_CRISPR2
- N
- essential_gene_gene_trap
- N
- gene_indispensability_pred
- E
- gene_indispensability_score
- 0.688
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Insrr
- Phenotype
- homeostasis/metabolism phenotype; reproductive system phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); normal phenotype; renal/urinary system phenotype;
Gene ontology
- Biological process
- transmembrane receptor protein tyrosine kinase signaling pathway;insulin receptor signaling pathway;peptidyl-tyrosine phosphorylation;male sex determination;actin cytoskeleton reorganization;protein autophosphorylation;anatomical structure development;cellular response to alkaline pH
- Cellular component
- integral component of plasma membrane;insulin receptor complex;axon;receptor complex
- Molecular function
- transmembrane receptor protein tyrosine kinase activity;insulin-activated receptor activity;ATP binding;phosphatidylinositol 3-kinase binding;insulin receptor substrate binding