ISLR

immunoglobulin superfamily containing leucine rich repeat, the group of I-set domain containing

Basic information

Region (hg38): 15:74173709-74176872

Links

ENSG00000129009 ∙ NCBI:3671 ∙ OMIM:602059 ∙ HGNC:6133 ∙ Uniprot:O14498 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ISLR gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ISLR gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					3	3
missense			31	1		32
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	31	1	3

Variants in ISLR

This is a list of pathogenic ClinVar variants found in the ISLR region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-74174903-G-A			Benign (Jan 22, 2018)
15-74174961-G-A		not specified	Uncertain significance (Aug 03, 2022)
15-74174979-C-G		not specified	Uncertain significance (Apr 13, 2023)
15-74174987-C-T			Benign (Jul 23, 2018)
15-74175025-G-A		not specified	Uncertain significance (May 31, 2023)
15-74175108-A-T		not specified	Uncertain significance (May 23, 2023)
15-74175163-G-C		not specified	Uncertain significance (Feb 26, 2024)
15-74175198-G-T		not specified	Uncertain significance (Jan 08, 2024)
15-74175274-G-A		not specified	Uncertain significance (Mar 28, 2024)
15-74175286-G-T		not specified	Uncertain significance (Oct 30, 2023)
15-74175304-G-A		not specified	Uncertain significance (May 16, 2023)
15-74175327-C-A		not specified	Uncertain significance (Mar 07, 2024)
15-74175327-C-T		not specified	Uncertain significance (Jul 06, 2021)
15-74175370-C-T		not specified	Uncertain significance (Apr 22, 2022)
15-74175392-C-T			Benign (Feb 09, 2018)
15-74175417-G-A		not specified	Uncertain significance (Oct 04, 2022)
15-74175423-G-A		not specified	Uncertain significance (Jun 06, 2022)
15-74175441-G-A		not specified	Uncertain significance (Mar 07, 2024)
15-74175451-C-T		not specified	Uncertain significance (Aug 02, 2022)
15-74175469-A-G		not specified	Uncertain significance (Sep 29, 2023)
15-74175483-G-A		not specified	Likely benign (May 18, 2022)
15-74175528-C-G		not specified	Uncertain significance (Nov 30, 2022)
15-74175547-C-T		not specified	Uncertain significance (May 20, 2024)
15-74175568-G-A		not specified	Uncertain significance (Apr 08, 2024)
15-74175600-C-T		not specified	Uncertain significance (Aug 08, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ISLR	protein_coding	protein_coding	ENST00000249842	1	3202

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0186	0.905	125721	0	25	125746	0.0000994

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.926	236	280	0.844	0.0000184	2730
Missense in Polyphen		75	99.555	0.75335		1071
Synonymous	-0.332	136	131	1.04	0.00000932	934
Loss of Function	1.50	4	8.81	0.454	3.79e-7	92

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000277	0.000275
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000124	0.000123
Middle Eastern	0.00	0.00
South Asian	0.000197	0.000196
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Pathway: Platelet degranulation ;Response to elevated platelet cytosolic Ca2+;Platelet activation, signaling and aggregation;Hemostasis (Consensus)

Recessive Scores

• pRec: 0.123

Intolerance Scores

• loftool: 0.682
• rvis_EVS: -0.64
• rvis_percentile_EVS: 16.63

Haploinsufficiency Scores

• pHI: 0.565
• hipred: N
• hipred_score: 0.297
• ghis: 0.605

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.194

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Islr
• Phenotype: growth/size/body region phenotype; endocrine/exocrine gland phenotype; limbs/digits/tail phenotype; skeleton phenotype; hematopoietic system phenotype; reproductive system phenotype

Gene ontology

• Biological process: platelet degranulation;cell adhesion
• Cellular component: extracellular region;platelet alpha granule lumen;extracellular exosome