ITGA9-AS1

ITGA9 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 3:37693655-37861848

Links

ENSG00000235257 ∙ NCBI:101928153 ∙ ∙ HGNC:49668 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ITGA9-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ITGA9-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			14		3	17
Total	0	0	14	0	3

Variants in ITGA9-AS1

This is a list of pathogenic ClinVar variants found in the ITGA9-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-37732734-A-G			Benign (Dec 31, 2019)
3-37732740-T-A		not specified	Uncertain significance (Nov 17, 2023)
3-37732793-T-A		not specified	Uncertain significance (Sep 26, 2023)
3-37736916-G-A		ITGA9-related disorder	Likely benign (Nov 02, 2020)
3-37736943-G-A		not specified	Uncertain significance (Nov 17, 2023)
3-37736977-C-T		not specified	Uncertain significance (Dec 16, 2022)
3-37736989-G-T		ITGA9-related disorder	Likely benign (Apr 01, 2019)
3-37736990-G-C		ITGA9-related disorder	Benign (Oct 21, 2019)
3-37736991-G-C		ITGA9-related disorder	Likely benign (Aug 05, 2019)
3-37741744-G-A		not specified	Uncertain significance (Oct 26, 2022)
3-37741764-A-C		not specified	Uncertain significance (Apr 19, 2024)
3-37741765-A-G		not specified	Uncertain significance (Nov 08, 2024)
3-37741770-C-G		not specified	Uncertain significance (Jun 02, 2023)
3-37741818-G-A		not specified	Uncertain significance (May 29, 2024)
3-37743963-G-A		ITGA9-related disorder	Likely benign (May 21, 2020)
3-37743969-G-A		not specified	Uncertain significance (Feb 01, 2023)
3-37750481-G-A		not specified	Uncertain significance (Aug 19, 2024)
3-37750543-G-C		not specified	Uncertain significance (Apr 26, 2024)
3-37777432-C-T		not specified	Uncertain significance (Nov 08, 2022)
3-37777464-A-G		not specified	Uncertain significance (Nov 03, 2022)
3-37777512-G-A		not specified	Uncertain significance (Jun 07, 2023)
3-37777549-G-A		not specified	Benign (Nov 02, 2012)
3-37779902-G-C		not specified	Uncertain significance (Sep 08, 2024)
3-37779975-G-A			Benign (Dec 31, 2019)
3-37785003-G-A		not specified	Uncertain significance (Jun 29, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP