KBTBD6

kelch repeat and BTB domain containing 6, the group of BTB domain containing

Basic information

Region (hg38): 13:41127569-41132802

Links

ENSG00000165572 ∙ NCBI:89890 ∙ OMIM:617738 ∙ HGNC:25340 ∙ Uniprot:Q86V97 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the KBTBD6 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the KBTBD6 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16	4		20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	4	0

Variants in KBTBD6

This is a list of pathogenic ClinVar variants found in the KBTBD6 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-41130768-G-A		not specified	Uncertain significance (Mar 02, 2023)
13-41130795-A-C		not specified	Uncertain significance (Nov 01, 2022)
13-41130942-C-T		not specified	Uncertain significance (Feb 02, 2024)
13-41130974-T-C		not specified	Likely benign (Jun 30, 2023)
13-41130975-T-C		not specified	Uncertain significance (Feb 10, 2022)
13-41131047-G-C		not specified	Likely benign (Oct 18, 2021)
13-41131191-C-A		not specified	Uncertain significance (Aug 11, 2022)
13-41131533-G-C		not specified	Likely benign (Dec 20, 2021)
13-41131548-T-C		not specified	Uncertain significance (May 10, 2024)
13-41131581-G-C		not specified	Uncertain significance (Jan 05, 2022)
13-41131604-T-A		not specified	Uncertain significance (Mar 30, 2024)
13-41131656-T-C		not specified	Uncertain significance (May 26, 2023)
13-41131701-T-A		not specified	Uncertain significance (Jan 03, 2024)
13-41131721-C-T		not specified	Uncertain significance (Jul 11, 2022)
13-41131725-T-G		not specified	Uncertain significance (Apr 25, 2023)
13-41131823-C-T		not specified	Uncertain significance (Jul 06, 2022)
13-41131824-T-G		not specified	Uncertain significance (Feb 02, 2024)
13-41131868-G-C		not specified	Uncertain significance (Nov 21, 2022)
13-41131918-C-G		not specified	Likely benign (May 20, 2024)
13-41132180-C-T		not specified	Likely benign (Jan 03, 2024)
13-41132222-T-C		not specified	Uncertain significance (Dec 01, 2022)
13-41132307-C-T		not specified	Uncertain significance (May 24, 2024)
13-41132421-A-G		not specified	Uncertain significance (Oct 22, 2021)
13-41132424-C-T		not specified	Uncertain significance (Jan 26, 2022)
13-41132477-C-T		not specified	Uncertain significance (Jun 17, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
KBTBD6	protein_coding	protein_coding	ENST00000379485	1	5178

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.973	0.0272	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.58	239	381	0.627	0.0000219	4423
Missense in Polyphen		48	114.62	0.41877		1401
Synonymous	-0.0176	150	150	1.00	0.00000836	1357
Loss of Function	3.72	2	19.9	0.100	0.00000121	233

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Pathway: Post-translational protein modification;Metabolism of proteins;Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation;Neddylation (Consensus)

Intolerance Scores

• loftool: 0.330
• rvis_EVS: -0.42
• rvis_percentile_EVS: 25.56

Haploinsufficiency Scores

• pHI: 0.311
• hipred: N
• hipred_score: 0.380
• ghis: 0.596

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.975

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Kbtbd6

Gene ontology

• Biological process: biological_process;post-translational protein modification
• Cellular component: cellular_component;cytosol
• Molecular function: molecular_function;protein binding