KCNB2

protein-coding

potassium voltage-gated channel subfamily B member 2, the group of Potassium voltage-gated channels

Gene summary

Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shab-related subfamily. This member is a delayed rectifier potassium channel. The gene is expressed in gastrointestinal smooth muscle cells. [provided by RefSeq, Jul 2008]

MANE transcript

NM_004770.3

Inheritance

AD

ClinVar variants

P:2U:100B:18

Top phenotype

neurodevelopmental disorder

gnomAD constraint

pLI —, LoF o/e 0.1

Max pathogenic AF

—

Genomic locus

chr8:72,537,225-72,938,349

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~401.1 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

neurodevelopmental disorderMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0700092

Submitter: G2P

neurodevelopmental disorderSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0700092

Submitter: PanelApp Australia

neurodevelopmental disorderMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0700092

Submitter: Ambry Genetics

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to KCNB2 variants in ClinVar

5 Conditions Cataloged
not specifiedTotal: 88
not providedTotal: 25
KCNB2-related disorderTotal: 7
KCNB2-associated neurodevelopmental disorderTotal: 3
neurodevelopmental syndrome with epilepsy and autismTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_004770.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
5
clinvar
3
clinvar
8
missense
1
clinvar
1
clinvar
98
clinvar
9
clinvar
1
clinvar
110
nonsense
2
clinvar
2
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
0
Total11100144120

Highest pathogenic variant AF is 6.8405444e-7

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 4 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_004770.3RefSeqNP_004761.22MANE Select
ENST00000523207.2EnsemblENSP00000430846.12MANE Select
ENST00001135721.1EnsemblENSP00000813716.12Standard
XM_017013982.2RefSeqXP_016869471.11Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Neuronal System
  • Voltage gated Potassium channels
  • Potassium Channels

Biological Process

  • potassium ion transport
  • regulation of smooth muscle contraction
  • regulation of ion transmembrane transport
  • protein homooligomerization
  • potassium ion transmembrane transport

Molecular Function

  • voltage-gated potassium channel activity
  • delayed rectifier potassium channel activity
  • protein heterodimerization activity

Cellular Component

  • plasma membrane
  • voltage-gated potassium channel complex
  • integral component of membrane
  • dendrite
  • neuronal cell body membrane

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000523207
Coding exons
2
Length
400959
Individuals with no LoFs
125706
Homozygous LoFs
0
Heterozygous LoFs
8
Defined
125714
p
0.0000318
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense2.253685110.7200.00002996010
Missense (PolyPhen)52168.210.309141993
Synonymous-1.332442191.110.00001501816
Loss of Function4.53329.60.1010.00000184333

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian0.000160.00016rare
Finnish0.0000930.000092rare
European (Non-Finnish)0.0000180.000018rare
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain and smooth muscle cells. Channels open or close in response to the voltage difference across the membrane, letting potassium ions pass in accordance with their electrochemical gradient. Homotetrameric channels mediate a delayed-rectifier voltage-dependent outward potassium current that display rapid activation and slow inactivation in response to membrane depolarization. Can form functional homotetrameric and heterotetrameric channels that contain variable proportions of KCNB1; channel properties depend on the type of alpha subunits that are part of the channel. Can also form functional heterotetrameric channels with other alpha subunits that are non- conducting when expressed alone, such as KCNS1 and KCNS2, creating a functionally diverse range of channel complexes. In vivo, membranes probably contain a mixture of heteromeric potassium channel complexes, making it difficult to assign currents observed in intact tissues to any particular potassium channel family member. Contributes to the delayed-rectifier voltage-gated potassium current in cortical pyramidal neurons and smooth muscle cells. {ECO:0000250|UniProtKB:A6H8H5, ECO:0000250|UniProtKB:Q63099}.;

Recessive Scores

pRec
0.116

Intolerance Scores

LoFtool
0.0810
RVIS EVS
-1.11
RVIS percentile EVS
6.83

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.292

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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